Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS24630

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS24620 and RS_RS24625 are separated by 22 nucleotidesRS_RS24625 and RS_RS24630 are separated by 155 nucleotidesRS_RS24630 and RS_RS24635 are separated by 105 nucleotidesRS_RS24635 and RS_RS24640 are separated by 224 nucleotides RS_RS24620: RS_RS24620 - phosphogluconate dehydratase, at 1,962,417 to 1,964,246 _RS24620 RS_RS24625: RS_RS24625 - universal stress protein, at 1,964,269 to 1,964,724 _RS24625 RS_RS24630: RS_RS24630 - DUF3293 domain-containing protein, at 1,964,880 to 1,965,338 _RS24630 RS_RS24635: RS_RS24635 - hypothetical protein, at 1,965,444 to 1,965,956 _RS24635 RS_RS24640: RS_RS24640 - cytochrome B558 subunit A, at 1,966,181 to 1,967,335 _RS24640 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1964.146 kb on - strandat 1964.573 kb on + strand, within RS_RS24625at 1964.573 kb on + strand, within RS_RS24625at 1964.573 kb on + strand, within RS_RS24625at 1964.574 kb on - strand, within RS_RS24625at 1964.574 kb on - strand, within RS_RS24625at 1964.576 kb on + strand, within RS_RS24625at 1964.576 kb on + strand, within RS_RS24625at 1964.577 kb on - strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.615 kb on + strand, within RS_RS24625at 1964.616 kb on - strand, within RS_RS24625at 1964.616 kb on - strand, within RS_RS24625at 1964.616 kb on - strand, within RS_RS24625at 1964.616 kb on - strand, within RS_RS24625at 1964.616 kb on - strand, within RS_RS24625at 1964.616 kb on - strand, within RS_RS24625at 1964.616 kb on - strand, within RS_RS24625at 1964.616 kb on - strand, within RS_RS24625at 1964.616 kb on - strand, within RS_RS24625at 1964.720 kb on + strandat 1964.720 kb on + strandat 1964.720 kb on + strandat 1964.720 kb on + strandat 1964.720 kb on + strandat 1964.720 kb on + strandat 1964.720 kb on + strandat 1964.721 kb on - strandat 1964.721 kb on - strandat 1964.721 kb on - strandat 1964.721 kb on - strandat 1964.721 kb on - strandat 1964.721 kb on - strandat 1964.721 kb on - strandat 1964.724 kb on + strandat 1964.724 kb on + strandat 1964.724 kb on + strandat 1964.724 kb on + strandat 1964.724 kb on + strandat 1964.724 kb on + strandat 1964.724 kb on + strandat 1964.725 kb on - strandat 1964.725 kb on - strandat 1964.725 kb on - strandat 1964.725 kb on - strandat 1964.725 kb on - strandat 1964.783 kb on + strandat 1964.784 kb on - strandat 1964.784 kb on - strandat 1964.784 kb on - strandat 1964.784 kb on - strandat 1964.793 kb on + strandat 1964.929 kb on - strand, within RS_RS24630at 1964.944 kb on - strand, within RS_RS24630at 1965.245 kb on + strand, within RS_RS24630at 1965.324 kb on + strandat 1965.325 kb on - strandat 1965.424 kb on + strandat 1965.425 kb on - strandat 1965.425 kb on - strandat 1965.425 kb on - strandat 1965.443 kb on + strandat 1965.444 kb on - strandat 1965.804 kb on + strand, within RS_RS24635at 1965.804 kb on + strand, within RS_RS24635at 1965.805 kb on - strand, within RS_RS24635at 1965.808 kb on + strand, within RS_RS24635at 1965.808 kb on + strand, within RS_RS24635at 1965.808 kb on + strand, within RS_RS24635at 1965.808 kb on + strand, within RS_RS24635at 1965.809 kb on - strand, within RS_RS24635at 1965.809 kb on - strand, within RS_RS24635at 1965.809 kb on - strand, within RS_RS24635at 1965.819 kb on + strand, within RS_RS24635at 1965.915 kb on + strandat 1965.916 kb on - strandat 1965.916 kb on - strandat 1966.073 kb on + strandat 1966.073 kb on + strandat 1966.143 kb on - strandat 1966.151 kb on + strandat 1966.151 kb on + strandat 1966.151 kb on + strandat 1966.152 kb on - strandat 1966.152 kb on - strandat 1966.152 kb on - strandat 1966.152 kb on - strandat 1966.152 kb on - strandat 1966.153 kb on + strandat 1966.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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1,964,146 - -0.9
1,964,573 + RS_RS24625 0.67 -0.9
1,964,573 + RS_RS24625 0.67 +1.4
1,964,573 + RS_RS24625 0.67 -1.0
1,964,574 - RS_RS24625 0.67 +0.4
1,964,574 - RS_RS24625 0.67 -1.2
1,964,576 + RS_RS24625 0.67 +0.6
1,964,576 + RS_RS24625 0.67 +0.7
1,964,577 - RS_RS24625 0.68 -1.3
1,964,615 + RS_RS24625 0.76 +1.0
1,964,615 + RS_RS24625 0.76 +1.4
1,964,615 + RS_RS24625 0.76 +0.9
1,964,615 + RS_RS24625 0.76 +1.7
1,964,615 + RS_RS24625 0.76 +1.8
1,964,615 + RS_RS24625 0.76 +0.8
1,964,615 + RS_RS24625 0.76 +1.4
1,964,615 + RS_RS24625 0.76 -0.5
1,964,615 + RS_RS24625 0.76 -0.9
1,964,615 + RS_RS24625 0.76 +0.3
1,964,615 + RS_RS24625 0.76 +0.5
1,964,615 + RS_RS24625 0.76 -0.6
1,964,616 - RS_RS24625 0.76 +0.6
1,964,616 - RS_RS24625 0.76 -0.9
1,964,616 - RS_RS24625 0.76 -1.5
1,964,616 - RS_RS24625 0.76 +0.4
1,964,616 - RS_RS24625 0.76 -0.6
1,964,616 - RS_RS24625 0.76 +0.8
1,964,616 - RS_RS24625 0.76 +2.5
1,964,616 - RS_RS24625 0.76 -0.8
1,964,616 - RS_RS24625 0.76 -0.0
1,964,720 + +0.1
1,964,720 + +0.4
1,964,720 + +0.1
1,964,720 + -1.0
1,964,720 + -1.9
1,964,720 + +0.4
1,964,720 + +1.6
1,964,721 - -1.3
1,964,721 - -2.4
1,964,721 - -0.1
1,964,721 - +0.4
1,964,721 - -0.9
1,964,721 - -2.3
1,964,721 - -0.3
1,964,724 + +0.5
1,964,724 + +0.5
1,964,724 + +1.3
1,964,724 + +0.4
1,964,724 + -0.2
1,964,724 + -0.5
1,964,724 + +0.9
1,964,725 - +0.2
1,964,725 - -0.2
1,964,725 - +1.1
1,964,725 - -0.9
1,964,725 - +0.4
1,964,783 + +0.6
1,964,784 - +2.2
1,964,784 - +1.2
1,964,784 - +0.4
1,964,784 - +0.4
1,964,793 + +0.0
1,964,929 - RS_RS24630 0.11 -1.2
1,964,944 - RS_RS24630 0.14 -0.3
1,965,245 + RS_RS24630 0.80 +0.0
1,965,324 + +0.0
1,965,325 - +0.9
1,965,424 + -3.8
1,965,425 - +0.5
1,965,425 - -0.2
1,965,425 - -1.0
1,965,443 + -0.6
1,965,444 - +0.8
1,965,804 + RS_RS24635 0.70 +0.6
1,965,804 + RS_RS24635 0.70 +0.6
1,965,805 - RS_RS24635 0.70 -0.1
1,965,808 + RS_RS24635 0.71 +0.6
1,965,808 + RS_RS24635 0.71 +0.5
1,965,808 + RS_RS24635 0.71 -0.0
1,965,808 + RS_RS24635 0.71 +1.0
1,965,809 - RS_RS24635 0.71 +0.7
1,965,809 - RS_RS24635 0.71 -1.5
1,965,809 - RS_RS24635 0.71 +0.8
1,965,819 + RS_RS24635 0.73 -0.4
1,965,915 + -0.3
1,965,916 - -2.3
1,965,916 - -0.4
1,966,073 + -0.8
1,966,073 + +0.7
1,966,143 - -1.1
1,966,151 + +2.0
1,966,151 + -1.6
1,966,151 + -1.7
1,966,152 - -0.6
1,966,152 - -0.5
1,966,152 - -1.0
1,966,152 - +0.1
1,966,152 - -0.4
1,966,153 + -0.5
1,966,153 + -0.4

Or see this region's nucleotide sequence