Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22605

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
1,431,502	+				+0.8
1,431,502	+				-0.6
1,431,502	+				+0.4
1,431,503	-				-1.8
1,431,834	-				-1.3
1,431,834	-				+0.4
1,431,964	+				+2.5
1,432,507	+				-1.4
1,432,556	-				-2.1
1,432,612	+				+0.5
1,432,613	-				+0.9
1,432,616	-				+1.5
1,432,659	+				-1.6
1,432,675	-				+0.5
1,432,683	-				-1.4
1,432,687	+				+0.6
1,432,687	+				+0.7
1,432,688	-				+1.1
1,432,707	+				-0.7
1,432,707	+				+0.4
1,432,707	+				-0.4
1,432,708	-				+5.6
1,432,708	-				+2.8
1,432,794	+				-1.0
1,432,794	+				+1.6
1,432,794	+				-0.2
1,432,794	+				+1.2
1,432,794	+				-0.7
1,432,794	+				+0.6
1,432,795	-				+0.4
1,432,795	-				+1.9
1,432,795	-				-0.0
1,432,921	+				-0.9
1,432,922	-				-0.5
1,432,965	+		RS_RS22605	0.11	-1.8
1,432,965	+		RS_RS22605	0.11	+1.5
1,432,965	+		RS_RS22605	0.11	+1.1
1,432,965	+		RS_RS22605	0.11	+1.1
1,432,974	+		RS_RS22605	0.11	-0.2
1,432,975	-		RS_RS22605	0.11	-1.4
1,433,034	+		RS_RS22605	0.12	-1.2
1,433,035	-		RS_RS22605	0.12	-0.1
1,433,035	-		RS_RS22605	0.12	-2.4
1,433,106	+		RS_RS22605	0.14	-0.1
1,433,107	-		RS_RS22605	0.14	+0.8
1,433,109	+		RS_RS22605	0.14	+0.1
1,433,124	+		RS_RS22605	0.14	+1.4
1,433,124	+		RS_RS22605	0.14	+0.1
1,433,124	+		RS_RS22605	0.14	+0.0
1,433,124	+		RS_RS22605	0.14	+0.2
1,433,124	+		RS_RS22605	0.14	+1.3
1,433,235	+		RS_RS22605	0.17	+0.1
1,433,271	+		RS_RS22605	0.17	+1.0
1,433,271	+		RS_RS22605	0.17	+2.0
1,433,313	+		RS_RS22605	0.18	-0.1
1,433,313	+		RS_RS22605	0.18	+0.6
1,433,314	-		RS_RS22605	0.18	+2.0
1,433,314	-		RS_RS22605	0.18	+0.7
1,433,428	+		RS_RS22605	0.21	-1.2
1,433,428	+		RS_RS22605	0.21	-0.5
1,433,428	+		RS_RS22605	0.21	+0.4
1,433,429	-		RS_RS22605	0.21	-1.8
1,433,429	-				+2.7
1,433,429	-		RS_RS22605	0.21	+0.2
1,433,429	-		RS_RS22605	0.21	-2.6
1,433,429	-		RS_RS22605	0.21	-0.9
1,433,429	-		RS_RS22605	0.21	+0.8
1,433,430	+		RS_RS22605	0.21	+0.6
1,433,430	+		RS_RS22605	0.21	-0.5
1,433,431	-		RS_RS22605	0.21	+0.7
1,433,575	-		RS_RS22605	0.24	+0.4
1,433,575	-		RS_RS22605	0.24	+1.0
1,433,691	+		RS_RS22605	0.27	+0.5
1,433,691	+		RS_RS22605	0.27	+0.3
1,433,692	-		RS_RS22605	0.27	-2.9
1,433,692	-		RS_RS22605	0.27	-2.0
1,433,751	+		RS_RS22605	0.28	-0.2
1,433,751	+		RS_RS22605	0.28	+0.8
1,433,751	+		RS_RS22605	0.28	-0.3
1,433,751	+		RS_RS22605	0.28	-0.3
1,433,752	-		RS_RS22605	0.28	-0.3
1,433,757	+		RS_RS22605	0.28	+1.1
1,433,758	-		RS_RS22605	0.28	-0.5
1,433,758	-		RS_RS22605	0.28	-0.8
1,433,758	-		RS_RS22605	0.28	+0.1
1,433,820	+		RS_RS22605	0.30	-0.6
1,433,820	+		RS_RS22605	0.30	-2.0
1,433,820	+		RS_RS22605	0.30	+0.1
1,433,821	-		RS_RS22605	0.30	+1.1
1,433,821	-		RS_RS22605	0.30	-0.1
1,433,821	-		RS_RS22605	0.30	-1.3
1,433,821	-		RS_RS22605	0.30	+0.8
1,433,875	-		RS_RS22605	0.31	+1.1
1,433,875	-		RS_RS22605	0.31	+1.0
1,433,881	-		RS_RS22605	0.31	+0.6
1,434,096	+		RS_RS22605	0.36	-0.1
1,434,156	+		RS_RS22605	0.37	+0.1
1,434,156	+		RS_RS22605	0.37	+0.0
1,434,156	+		RS_RS22605	0.37	+0.1
1,434,156	+		RS_RS22605	0.37	-2.3
1,434,156	+		RS_RS22605	0.37	+3.2
1,434,157	-		RS_RS22605	0.37	-1.3
1,434,157	-		RS_RS22605	0.37	+0.9
1,434,288	+		RS_RS22605	0.40	+0.4
1,434,289	-		RS_RS22605	0.40	+1.1
1,434,294	+		RS_RS22605	0.40	-1.0
1,434,294	+		RS_RS22605	0.40	-0.3
1,434,294	+		RS_RS22605	0.40	+0.0
1,434,348	+		RS_RS22605	0.41	+0.6
1,434,418	-		RS_RS22605	0.43	-2.8
1,434,475	-		RS_RS22605	0.44	-0.4
1,434,480	+		RS_RS22605	0.44	+0.3
1,434,537	+		RS_RS22605	0.45	-1.9
1,434,600	+		RS_RS22605	0.47	+0.7
1,434,600	+		RS_RS22605	0.47	-2.9
1,434,600	+		RS_RS22605	0.47	-0.0
1,434,600	+		RS_RS22605	0.47	-0.8
1,434,600	+		RS_RS22605	0.47	-2.3
1,434,600	+		RS_RS22605	0.47	+1.7
1,434,600	+		RS_RS22605	0.47	+1.6
1,434,601	-		RS_RS22605	0.47	+0.6
1,434,663	+		RS_RS22605	0.48	+0.5
1,434,663	+		RS_RS22605	0.48	+1.0
1,434,748	-		RS_RS22605	0.50	-2.7
1,434,867	+		RS_RS22605	0.53	-0.2
1,434,990	+		RS_RS22605	0.55	+0.9
1,434,991	-		RS_RS22605	0.55	+0.3
1,435,053	+		RS_RS22605	0.57	+2.1
1,435,245	+		RS_RS22605	0.61	-0.4
1,435,245	+		RS_RS22605	0.61	-0.1
1,435,246	-		RS_RS22605	0.61	+1.0
1,435,360	-		RS_RS22605	0.63	-0.6
1,435,422	+		RS_RS22605	0.65	-1.5
1,435,423	-		RS_RS22605	0.65	+1.2
1,435,423	-		RS_RS22605	0.65	+0.9
1,435,428	+		RS_RS22605	0.65	+0.3
1,435,428	+		RS_RS22605	0.65	+0.1
1,435,428	+		RS_RS22605	0.65	+0.6
1,435,428	+		RS_RS22605	0.65	-0.2
1,435,429	-		RS_RS22605	0.65	-0.0
1,435,429	-		RS_RS22605	0.65	-1.1
1,435,482	+		RS_RS22605	0.66	+0.0
1,435,482	+		RS_RS22605	0.66	+1.1
1,435,488	+		RS_RS22605	0.66	-0.2
1,435,489	-		RS_RS22605	0.66	+0.7
1,435,591	+		RS_RS22605	0.68	-0.8
1,435,592	-		RS_RS22605	0.68	+0.0
1,435,592	-		RS_RS22605	0.68	+0.5
1,435,592	-		RS_RS22605	0.68	-0.0
1,436,854	-				+0.1
1,436,863	-				+0.5
1,436,889	+				+0.6
1,436,889	+				-0.0
1,436,889	+				-1.9
1,436,889	+				-1.1
1,436,890	-				-2.6
1,436,890	-				+0.1
1,436,890	-				-1.2
1,436,890	-				+1.3
1,437,208	+		RS_RS22610	0.39	-1.0
1,437,209	-		RS_RS22610	0.39	-0.2
1,437,269	-		RS_RS22610	0.54	+1.3
1,437,313	+		RS_RS22610	0.64	-0.0
1,437,313	+		RS_RS22610	0.64	-0.2
1,437,314	-		RS_RS22610	0.64	+0.9
1,437,314	-		RS_RS22610	0.64	+0.5
1,437,460	+				-2.0
1,437,461	-				-0.6
1,437,461	-				-2.5
1,437,461	-				-0.1
1,437,461	-				+0.1
1,437,461	-				+1.3
1,437,461	-				-0.6
1,437,717	-				+1.4
1,437,717	-				+0.8
1,437,717	-				+0.6
1,437,809	+		RS_RS22615	0.13	-1.0
1,438,027	+		RS_RS22615	0.22	-1.7
1,438,027	+		RS_RS22615	0.22	+0.2