Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22360

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS22355 and RS_RS22360 overlap by 4 nucleotidesRS_RS22360 and RS_RS22365 are separated by 18 nucleotides RS_RS22355: RS_RS22355 - CpaF family protein, at 1,376,464 to 1,377,816 _RS22355 RS_RS22360: RS_RS22360 - pilus assembly protein, at 1,377,813 to 1,379,132 _RS22360 RS_RS22365: RS_RS22365 - membrane protein, at 1,379,151 to 1,380,515 _RS22365 Position (kb) 1377 1378 1379 1380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1376.814 kb on - strand, within RS_RS22355at 1377.098 kb on + strand, within RS_RS22355at 1377.098 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.952 kb on + strand, within RS_RS22360at 1377.953 kb on - strand, within RS_RS22360at 1378.529 kb on - strand, within RS_RS22360at 1379.347 kb on + strand, within RS_RS22365at 1379.347 kb on + strand, within RS_RS22365at 1379.347 kb on + strand, within RS_RS22365at 1379.347 kb on + strand, within RS_RS22365at 1379.348 kb on - strand, within RS_RS22365at 1379.348 kb on - strand, within RS_RS22365at 1379.641 kb on + strand, within RS_RS22365at 1379.641 kb on + strand, within RS_RS22365at 1379.887 kb on + strand, within RS_RS22365at 1379.888 kb on - strand, within RS_RS22365at 1379.888 kb on - strand, within RS_RS22365at 1379.888 kb on - strand, within RS_RS22365at 1379.888 kb on - strand, within RS_RS22365at 1380.115 kb on + strand, within RS_RS22365at 1380.115 kb on + strand, within RS_RS22365

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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1,376,814 - RS_RS22355 0.26 -1.3
1,377,098 + RS_RS22355 0.47 +0.3
1,377,098 + RS_RS22355 0.47 -3.5
1,377,470 + RS_RS22355 0.74 -0.4
1,377,470 + RS_RS22355 0.74 +0.3
1,377,470 + RS_RS22355 0.74 +1.5
1,377,470 + RS_RS22355 0.74 -0.1
1,377,470 + RS_RS22355 0.74 -1.8
1,377,470 + RS_RS22355 0.74 -0.6
1,377,470 + RS_RS22355 0.74 -1.6
1,377,470 + RS_RS22355 0.74 -0.7
1,377,470 + RS_RS22355 0.74 -0.7
1,377,470 + RS_RS22355 0.74 -0.5
1,377,471 - RS_RS22355 0.74 +0.4
1,377,471 - RS_RS22355 0.74 -0.9
1,377,471 - RS_RS22355 0.74 -0.8
1,377,471 - RS_RS22355 0.74 +0.8
1,377,471 - RS_RS22355 0.74 -0.4
1,377,471 - RS_RS22355 0.74 -1.5
1,377,471 - RS_RS22355 0.74 -1.3
1,377,471 - RS_RS22355 0.74 +0.3
1,377,471 - RS_RS22355 0.74 -0.7
1,377,471 - RS_RS22355 0.74 -0.5
1,377,952 + RS_RS22360 0.11 +0.5
1,377,953 - RS_RS22360 0.11 -0.4
1,378,529 - RS_RS22360 0.54 -0.4
1,379,347 + RS_RS22365 0.14 -3.2
1,379,347 + RS_RS22365 0.14 +0.8
1,379,347 + RS_RS22365 0.14 -0.4
1,379,347 + RS_RS22365 0.14 -0.4
1,379,348 - RS_RS22365 0.14 -1.8
1,379,348 - RS_RS22365 0.14 +1.8
1,379,641 + RS_RS22365 0.36 +0.1
1,379,641 + RS_RS22365 0.36 -1.0
1,379,887 + RS_RS22365 0.54 +1.4
1,379,888 - RS_RS22365 0.54 +0.8
1,379,888 - RS_RS22365 0.54 -0.3
1,379,888 - RS_RS22365 0.54 -0.7
1,379,888 - RS_RS22365 0.54 -1.3
1,380,115 + RS_RS22365 0.71 +0.0
1,380,115 + RS_RS22365 0.71 -0.4

Or see this region's nucleotide sequence