Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20105 and RS_RS26195 are separated by 388 nucleotides RS_RS26195 and RS_RS20110 are separated by 51 nucleotides RS_RS20110 and RS_RS20115 overlap by 4 nucleotides
RS_RS20105: RS_RS20105 - cobalt-precorrin-7 (C(5))-methyltransferase, at 756,067 to 756,774
_RS20105
RS_RS26195: RS_RS26195 - hypothetical protein, at 757,163 to 757,370
_RS26195
RS_RS20110: RS_RS20110 - VWA domain-containing protein, at 757,422 to 759,335
_RS20110
RS_RS20115: RS_RS20115 - cobaltochelatase, at 759,332 to 763,471
_RS20115
Position (kb) 757
758
759
760 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 756.509 kb on + strand, within RS_RS20105 at 756.510 kb on - strand, within RS_RS20105 at 757.063 kb on + strand at 757.063 kb on + strand at 757.165 kb on - strand at 757.328 kb on + strand, within RS_RS26195 at 757.328 kb on + strand, within RS_RS26195 at 757.328 kb on + strand, within RS_RS26195 at 757.540 kb on + strand at 757.541 kb on - strand at 757.541 kb on - strand at 757.871 kb on - strand, within RS_RS20110 at 758.341 kb on - strand, within RS_RS20110 at 758.930 kb on + strand, within RS_RS20110 at 758.930 kb on + strand, within RS_RS20110 at 758.931 kb on - strand, within RS_RS20110 at 758.932 kb on + strand, within RS_RS20110 at 758.932 kb on + strand, within RS_RS20110 at 758.932 kb on + strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 758.933 kb on - strand, within RS_RS20110 at 759.531 kb on + strand at 759.531 kb on + strand at 759.532 kb on - strand at 759.532 kb on - strand at 759.552 kb on + strand at 759.552 kb on + strand at 759.552 kb on + strand at 759.553 kb on - strand at 759.553 kb on - strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.636 kb on + strand at 759.636 kb on + strand at 759.637 kb on - strand at 759.637 kb on - strand at 759.637 kb on - strand at 759.816 kb on + strand, within RS_RS20115 at 759.816 kb on + strand, within RS_RS20115 at 759.826 kb on - strand, within RS_RS20115 at 759.826 kb on - strand, within RS_RS20115 at 759.969 kb on + strand, within RS_RS20115 at 759.969 kb on + strand, within RS_RS20115 at 759.969 kb on + strand, within RS_RS20115 at 759.970 kb on - strand, within RS_RS20115 at 759.970 kb on - strand, within RS_RS20115 at 759.970 kb on - strand, within RS_RS20115 at 759.970 kb on - strand, within RS_RS20115 at 760.038 kb on + strand, within RS_RS20115 at 760.069 kb on - strand, within RS_RS20115 at 760.137 kb on + strand, within RS_RS20115 at 760.138 kb on - strand, within RS_RS20115
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 756,509 + RS_RS20105 0.62 -0.7 756,510 - RS_RS20105 0.63 +0.1 757,063 + +0.4 757,063 + +0.7 757,165 - +0.4 757,328 + RS_RS26195 0.79 +0.6 757,328 + RS_RS26195 0.79 -1.6 757,328 + RS_RS26195 0.79 -0.7 757,540 + -3.9 757,541 - -1.1 757,541 - +0.0 757,871 - RS_RS20110 0.23 +0.0 758,341 - RS_RS20110 0.48 +1.5 758,930 + RS_RS20110 0.79 -0.7 758,930 + RS_RS20110 0.79 -1.8 758,931 - RS_RS20110 0.79 +0.4 758,932 + RS_RS20110 0.79 +0.0 758,932 + RS_RS20110 0.79 +0.9 758,932 + RS_RS20110 0.79 -1.2 758,933 - RS_RS20110 0.79 -0.8 758,933 - RS_RS20110 0.79 -2.6 758,933 - RS_RS20110 0.79 -0.2 758,933 - RS_RS20110 0.79 -0.9 758,933 - RS_RS20110 0.79 +0.3 758,933 - RS_RS20110 0.79 -0.2 758,933 - RS_RS20110 0.79 -3.5 758,933 - RS_RS20110 0.79 -0.2 758,933 - RS_RS20110 0.79 -1.8 758,933 - RS_RS20110 0.79 +0.2 758,933 - RS_RS20110 0.79 -1.3 758,933 - RS_RS20110 0.79 -0.5 759,531 + -0.9 759,531 + -1.3 759,532 - +1.2 759,532 - -0.7 759,552 + -1.1 759,552 + -0.5 759,552 + +1.0 759,553 - +0.5 759,553 - +0.3 759,600 + -1.9 759,600 + +0.9 759,601 - +0.1 759,601 - -0.8 759,636 + -1.9 759,636 + -0.1 759,637 - -0.2 759,637 - -1.3 759,637 - -1.2 759,816 + RS_RS20115 0.12 +0.1 759,816 + RS_RS20115 0.12 -0.5 759,826 - RS_RS20115 0.12 +0.1 759,826 - RS_RS20115 0.12 -0.3 759,969 + RS_RS20115 0.15 +0.9 759,969 + RS_RS20115 0.15 -0.2 759,969 + RS_RS20115 0.15 +0.3 759,970 - RS_RS20115 0.15 +0.1 759,970 - RS_RS20115 0.15 +0.0 759,970 - RS_RS20115 0.15 -0.0 759,970 - RS_RS20115 0.15 -0.3 760,038 + RS_RS20115 0.17 -1.9 760,069 - RS_RS20115 0.18 -0.2 760,137 + RS_RS20115 0.19 -0.2 760,138 - RS_RS20115 0.19 -0.9
Or see this region's nucleotide sequence