Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18910 and RS_RS18915 are separated by 10 nucleotides RS_RS18915 and RS_RS18920 overlap by 4 nucleotides
RS_RS18910: RS_RS18910 - histidine ammonia-lyase, at 470,716 to 472,284
_RS18910
RS_RS18915: RS_RS18915 - acyltransferase, at 472,295 to 474,004
_RS18915
RS_RS18920: RS_RS18920 - AMP-dependent synthetase, at 474,001 to 475,692
_RS18920
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 471.327 kb on + strand, within RS_RS18910 at 471.426 kb on - strand, within RS_RS18910 at 471.626 kb on + strand, within RS_RS18910 at 471.627 kb on - strand, within RS_RS18910 at 471.727 kb on + strand, within RS_RS18910 at 471.727 kb on + strand, within RS_RS18910 at 471.727 kb on + strand, within RS_RS18910 at 471.728 kb on - strand, within RS_RS18910 at 471.728 kb on - strand, within RS_RS18910 at 471.728 kb on - strand, within RS_RS18910 at 471.728 kb on - strand, within RS_RS18910 at 471.798 kb on - strand, within RS_RS18910 at 471.798 kb on - strand, within RS_RS18910 at 471.900 kb on + strand, within RS_RS18910 at 471.900 kb on + strand, within RS_RS18910 at 471.901 kb on - strand, within RS_RS18910 at 471.901 kb on - strand, within RS_RS18910 at 471.901 kb on - strand, within RS_RS18910 at 471.901 kb on - strand, within RS_RS18910 at 471.901 kb on - strand, within RS_RS18910 at 471.903 kb on - strand, within RS_RS18910 at 471.903 kb on - strand, within RS_RS18910 at 472.091 kb on + strand, within RS_RS18910 at 472.092 kb on - strand, within RS_RS18910 at 472.092 kb on - strand, within RS_RS18910 at 472.470 kb on + strand, within RS_RS18915 at 472.470 kb on + strand, within RS_RS18915 at 472.479 kb on + strand, within RS_RS18915 at 472.480 kb on - strand, within RS_RS18915 at 472.545 kb on + strand, within RS_RS18915 at 472.545 kb on + strand, within RS_RS18915 at 472.546 kb on - strand, within RS_RS18915 at 472.779 kb on + strand, within RS_RS18915 at 473.067 kb on + strand, within RS_RS18915 at 473.068 kb on - strand, within RS_RS18915 at 473.068 kb on - strand, within RS_RS18915 at 473.113 kb on - strand, within RS_RS18915 at 473.361 kb on - strand, within RS_RS18915 at 473.361 kb on - strand, within RS_RS18915 at 473.361 kb on - strand, within RS_RS18915 at 473.392 kb on - strand, within RS_RS18915 at 473.392 kb on - strand, within RS_RS18915 at 473.523 kb on + strand, within RS_RS18915 at 473.607 kb on + strand, within RS_RS18915 at 473.608 kb on - strand, within RS_RS18915 at 473.637 kb on + strand, within RS_RS18915 at 473.638 kb on - strand, within RS_RS18915 at 473.968 kb on + strand at 473.970 kb on + strand at 473.970 kb on + strand at 473.970 kb on + strand at 473.970 kb on + strand at 473.971 kb on - strand at 473.971 kb on - strand at 473.971 kb on - strand at 473.971 kb on - strand at 474.071 kb on - strand at 474.297 kb on - strand, within RS_RS18920 at 474.297 kb on - strand, within RS_RS18920 at 474.459 kb on - strand, within RS_RS18920 at 474.608 kb on + strand, within RS_RS18920 at 474.608 kb on + strand, within RS_RS18920 at 474.609 kb on - strand, within RS_RS18920 at 474.887 kb on + strand, within RS_RS18920 at 474.888 kb on - strand, within RS_RS18920 at 474.888 kb on - strand, within RS_RS18920
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 471,327 + RS_RS18910 0.39 +0.1 471,426 - RS_RS18910 0.45 -0.9 471,626 + RS_RS18910 0.58 -1.1 471,627 - RS_RS18910 0.58 +2.0 471,727 + RS_RS18910 0.64 +0.6 471,727 + RS_RS18910 0.64 -1.5 471,727 + RS_RS18910 0.64 -0.3 471,728 - RS_RS18910 0.64 -1.1 471,728 - RS_RS18910 0.64 +0.1 471,728 - RS_RS18910 0.64 -0.2 471,728 - RS_RS18910 0.64 -1.3 471,798 - RS_RS18910 0.69 +0.1 471,798 - RS_RS18910 0.69 -0.7 471,900 + RS_RS18910 0.75 +0.2 471,900 + RS_RS18910 0.75 -0.4 471,901 - RS_RS18910 0.76 -0.1 471,901 - RS_RS18910 0.76 -1.0 471,901 - RS_RS18910 0.76 +0.2 471,901 - RS_RS18910 0.76 -2.2 471,901 - RS_RS18910 0.76 -1.9 471,903 - RS_RS18910 0.76 -0.1 471,903 - RS_RS18910 0.76 +1.6 472,091 + RS_RS18910 0.88 -2.8 472,092 - RS_RS18910 0.88 -0.1 472,092 - RS_RS18910 0.88 +0.7 472,470 + RS_RS18915 0.10 -0.4 472,470 + RS_RS18915 0.10 -1.1 472,479 + RS_RS18915 0.11 -0.7 472,480 - RS_RS18915 0.11 -0.2 472,545 + RS_RS18915 0.15 +0.0 472,545 + RS_RS18915 0.15 -1.0 472,546 - RS_RS18915 0.15 -1.7 472,779 + RS_RS18915 0.28 +0.4 473,067 + RS_RS18915 0.45 +2.3 473,068 - RS_RS18915 0.45 +1.0 473,068 - RS_RS18915 0.45 -0.6 473,113 - RS_RS18915 0.48 +1.2 473,361 - RS_RS18915 0.62 +1.6 473,361 - RS_RS18915 0.62 -0.8 473,361 - RS_RS18915 0.62 +0.2 473,392 - RS_RS18915 0.64 -0.2 473,392 - RS_RS18915 0.64 -1.4 473,523 + RS_RS18915 0.72 -0.7 473,607 + RS_RS18915 0.77 +0.5 473,608 - RS_RS18915 0.77 +0.1 473,637 + RS_RS18915 0.78 +0.9 473,638 - RS_RS18915 0.79 +0.3 473,968 + +0.8 473,970 + -0.7 473,970 + +0.1 473,970 + +1.8 473,970 + +0.4 473,971 - +1.1 473,971 - -1.6 473,971 - -0.9 473,971 - +3.2 474,071 - -1.9 474,297 - RS_RS18920 0.17 -0.4 474,297 - RS_RS18920 0.17 -2.9 474,459 - RS_RS18920 0.27 +0.2 474,608 + RS_RS18920 0.36 -0.4 474,608 + RS_RS18920 0.36 -2.8 474,609 - RS_RS18920 0.36 +0.6 474,887 + RS_RS18920 0.52 -0.3 474,888 - RS_RS18920 0.52 -1.2 474,888 - RS_RS18920 0.52 -0.8
Or see this region's nucleotide sequence