Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17975 and RS_RS17980 overlap by 4 nucleotides RS_RS17980 and RS_RS17985 are separated by 217 nucleotides
RS_RS17975: RS_RS17975 - cysteine desulfurase, at 213,875 to 215,044
_RS17975
RS_RS17980: RS_RS17980 - class I SAM-dependent methyltransferase, at 215,041 to 215,865
_RS17980
RS_RS17985: RS_RS17985 - DUF2345 domain-containing protein, at 216,083 to 218,971
_RS17985
Position (kb) 215
216 Strain fitness (log2 ratio) -2
-1
0
1 at 214.250 kb on + strand, within RS_RS17975 at 214.251 kb on - strand, within RS_RS17975 at 214.251 kb on - strand, within RS_RS17975 at 214.251 kb on - strand, within RS_RS17975 at 214.251 kb on - strand, within RS_RS17975 at 214.778 kb on + strand, within RS_RS17975 at 214.778 kb on + strand, within RS_RS17975 at 214.778 kb on + strand, within RS_RS17975 at 214.779 kb on - strand, within RS_RS17975 at 214.779 kb on - strand, within RS_RS17975 at 214.779 kb on - strand, within RS_RS17975 at 214.779 kb on - strand, within RS_RS17975 at 214.779 kb on - strand, within RS_RS17975 at 214.779 kb on - strand, within RS_RS17975 at 214.985 kb on - strand at 214.985 kb on - strand at 214.985 kb on - strand at 215.036 kb on + strand at 215.036 kb on + strand at 215.037 kb on - strand at 215.084 kb on - strand at 215.130 kb on - strand, within RS_RS17980 at 215.130 kb on - strand, within RS_RS17980 at 215.143 kb on + strand, within RS_RS17980 at 215.143 kb on + strand, within RS_RS17980 at 215.144 kb on - strand, within RS_RS17980 at 215.144 kb on - strand, within RS_RS17980 at 215.467 kb on - strand, within RS_RS17980 at 215.533 kb on + strand, within RS_RS17980 at 215.533 kb on + strand, within RS_RS17980 at 215.533 kb on + strand, within RS_RS17980 at 215.534 kb on - strand, within RS_RS17980 at 215.602 kb on + strand, within RS_RS17980 at 215.611 kb on + strand, within RS_RS17980 at 215.612 kb on - strand, within RS_RS17980 at 215.668 kb on - strand, within RS_RS17980 at 215.668 kb on - strand, within RS_RS17980 at 215.972 kb on - strand at 215.972 kb on - strand at 215.978 kb on + strand at 215.979 kb on - strand at 216.065 kb on + strand at 216.066 kb on - strand at 216.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 214,250 + RS_RS17975 0.32 +0.5 214,251 - RS_RS17975 0.32 -0.7 214,251 - RS_RS17975 0.32 +0.8 214,251 - RS_RS17975 0.32 -0.1 214,251 - RS_RS17975 0.32 +0.2 214,778 + RS_RS17975 0.77 -0.5 214,778 + RS_RS17975 0.77 -0.8 214,778 + RS_RS17975 0.77 -0.0 214,779 - RS_RS17975 0.77 -0.9 214,779 - RS_RS17975 0.77 -0.3 214,779 - RS_RS17975 0.77 +0.2 214,779 - RS_RS17975 0.77 +0.9 214,779 - RS_RS17975 0.77 +0.3 214,779 - RS_RS17975 0.77 -0.1 214,985 - -0.1 214,985 - -0.3 214,985 - -1.3 215,036 + -0.3 215,036 + -0.0 215,037 - +1.0 215,084 - -2.1 215,130 - RS_RS17980 0.11 +0.5 215,130 - RS_RS17980 0.11 -1.4 215,143 + RS_RS17980 0.12 -2.5 215,143 + RS_RS17980 0.12 +0.7 215,144 - RS_RS17980 0.12 +0.8 215,144 - RS_RS17980 0.12 +1.1 215,467 - RS_RS17980 0.52 +1.0 215,533 + RS_RS17980 0.60 +0.1 215,533 + RS_RS17980 0.60 +1.2 215,533 + RS_RS17980 0.60 -0.7 215,534 - RS_RS17980 0.60 +0.2 215,602 + RS_RS17980 0.68 -1.4 215,611 + RS_RS17980 0.69 -2.3 215,612 - RS_RS17980 0.69 +0.0 215,668 - RS_RS17980 0.76 -0.1 215,668 - RS_RS17980 0.76 +0.2 215,972 - -1.3 215,972 - -0.7 215,978 + -0.3 215,979 - -0.4 216,065 + -2.6 216,066 - -1.2 216,135 - -1.0
Or see this region's nucleotide sequence