Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS16620 and RS_RS16625 are separated by 36 nucleotides RS_RS16625 and RS_RS16630 are separated by 64 nucleotides RS_RS16630 and RS_RS16635 are separated by 72 nucleotides RS_RS16635 and RS_RS16640 are separated by 2 nucleotides
RS_RS16620: RS_RS16620 - ATP synthase subunit beta, at 3,579,965 to 3,581,368
_RS16620
RS_RS16625: RS_RS16625 - ATP synthase subunit gamma, at 3,581,405 to 3,582,280
_RS16625
RS_RS16630: RS_RS16630 - ATP synthase subunit alpha, at 3,582,345 to 3,583,886
_RS16630
RS_RS16635: RS_RS16635 - ATP synthase subunit delta, at 3,583,959 to 3,584,495
_RS16635
RS_RS16640: RS_RS16640 - ATP synthase subunit b 1, at 3,584,498 to 3,584,968
_RS16640
Position (kb) 3582
3583
3584 Strain fitness (log2 ratio) -2
-1
0
1 at 3581.382 kb on - strand at 3581.382 kb on - strand at 3581.387 kb on - strand at 3581.387 kb on - strand at 3583.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 3,581,382 - -2.2 3,581,382 - -1.8 3,581,387 - -0.6 3,581,387 - +0.9 3,583,961 - -1.4
Or see this region's nucleotide sequence