Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS15965 and RS_RS15970 are separated by 500 nucleotides RS_RS15970 and RS_RS15975 are separated by 12 nucleotides
RS_RS15965: RS_RS15965 - DUF746 domain-containing protein, at 3,438,377 to 3,439,165
_RS15965
RS_RS15970: RS_RS15970 - hypothetical protein, at 3,439,666 to 3,440,511
_RS15970
RS_RS15975: RS_RS15975 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 3,440,524 to 3,442,275
_RS15975
Position (kb) 3439
3440
3441 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3438.747 kb on + strand, within RS_RS15965 at 3438.747 kb on + strand, within RS_RS15965 at 3438.747 kb on + strand, within RS_RS15965 at 3438.747 kb on + strand, within RS_RS15965 at 3438.747 kb on + strand, within RS_RS15965 at 3438.747 kb on + strand, within RS_RS15965 at 3438.747 kb on + strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.748 kb on - strand, within RS_RS15965 at 3438.961 kb on - strand, within RS_RS15965 at 3439.031 kb on - strand, within RS_RS15965 at 3439.031 kb on - strand, within RS_RS15965 at 3439.260 kb on + strand at 3439.260 kb on + strand at 3439.261 kb on - strand at 3439.261 kb on - strand at 3439.293 kb on + strand at 3439.820 kb on + strand, within RS_RS15970 at 3439.820 kb on + strand, within RS_RS15970 at 3439.820 kb on + strand, within RS_RS15970 at 3439.991 kb on + strand, within RS_RS15970 at 3439.991 kb on + strand, within RS_RS15970 at 3439.991 kb on + strand, within RS_RS15970 at 3440.432 kb on + strand at 3440.459 kb on - strand at 3440.922 kb on - strand, within RS_RS15975 at 3441.087 kb on - strand, within RS_RS15975 at 3441.291 kb on - strand, within RS_RS15975 at 3441.416 kb on + strand, within RS_RS15975 at 3441.416 kb on + strand, within RS_RS15975 at 3441.416 kb on + strand, within RS_RS15975 at 3441.416 kb on + strand, within RS_RS15975 at 3441.507 kb on - strand, within RS_RS15975
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 3,438,747 + RS_RS15965 0.47 +0.4 3,438,747 + RS_RS15965 0.47 +0.1 3,438,747 + RS_RS15965 0.47 +0.3 3,438,747 + RS_RS15965 0.47 -1.3 3,438,747 + RS_RS15965 0.47 +2.4 3,438,747 + RS_RS15965 0.47 +0.0 3,438,747 + RS_RS15965 0.47 +0.5 3,438,748 - RS_RS15965 0.47 +0.2 3,438,748 - RS_RS15965 0.47 -0.2 3,438,748 - RS_RS15965 0.47 -1.0 3,438,748 - RS_RS15965 0.47 -4.7 3,438,748 - RS_RS15965 0.47 -3.5 3,438,748 - RS_RS15965 0.47 +0.0 3,438,748 - RS_RS15965 0.47 -0.3 3,438,748 - RS_RS15965 0.47 +0.7 3,438,748 - RS_RS15965 0.47 -0.3 3,438,748 - RS_RS15965 0.47 -1.2 3,438,961 - RS_RS15965 0.74 -0.1 3,439,031 - RS_RS15965 0.83 -1.1 3,439,031 - RS_RS15965 0.83 +0.9 3,439,260 + +0.4 3,439,260 + +0.3 3,439,261 - +0.0 3,439,261 - -0.7 3,439,293 + +0.5 3,439,820 + RS_RS15970 0.18 +1.0 3,439,820 + RS_RS15970 0.18 +1.0 3,439,820 + RS_RS15970 0.18 +0.5 3,439,991 + RS_RS15970 0.38 +0.6 3,439,991 + RS_RS15970 0.38 +0.8 3,439,991 + RS_RS15970 0.38 -3.4 3,440,432 + +0.4 3,440,459 - -1.9 3,440,922 - RS_RS15975 0.23 -1.0 3,441,087 - RS_RS15975 0.32 -3.5 3,441,291 - RS_RS15975 0.44 -0.4 3,441,416 + RS_RS15975 0.51 -1.0 3,441,416 + RS_RS15975 0.51 +1.0 3,441,416 + RS_RS15975 0.51 -1.7 3,441,416 + RS_RS15975 0.51 +0.3 3,441,507 - RS_RS15975 0.56 +0.0
Or see this region's nucleotide sequence