Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS14070

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS14060 and RS_RS14065 are separated by 85 nucleotidesRS_RS14065 and RS_RS14070 are separated by 30 nucleotidesRS_RS14070 and RS_RS14075 are separated by 64 nucleotidesRS_RS14075 and RS_RS14080 are separated by 14 nucleotides RS_RS14060: RS_RS14060 - hypoxanthine-guanine phosphoribosyltransferase, at 3,026,111 to 3,026,659 _RS14060 RS_RS14065: RS_RS14065 - MarC family protein, at 3,026,745 to 3,027,338 _RS14065 RS_RS14070: RS_RS14070 - 2-oxoglutarate-dependent dioxygenase, at 3,027,369 to 3,028,238 _RS14070 RS_RS14075: RS_RS14075 - lytic transglycosylase, at 3,028,303 to 3,029,040 _RS14075 RS_RS14080: RS_RS14080 - proline--tRNA ligase, at 3,029,055 to 3,030,779 _RS14080 Position (kb) 3027 3028 3029Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3026.474 kb on - strand, within RS_RS14060at 3026.499 kb on - strand, within RS_RS14060at 3026.586 kb on + strand, within RS_RS14060at 3026.586 kb on + strand, within RS_RS14060at 3027.331 kb on + strandat 3027.331 kb on + strandat 3027.332 kb on - strandat 3027.385 kb on + strandat 3027.458 kb on + strand, within RS_RS14070at 3027.458 kb on + strand, within RS_RS14070at 3027.459 kb on - strand, within RS_RS14070at 3027.459 kb on - strand, within RS_RS14070at 3027.491 kb on - strand, within RS_RS14070at 3027.584 kb on - strand, within RS_RS14070at 3027.584 kb on - strand, within RS_RS14070at 3027.676 kb on + strand, within RS_RS14070at 3027.695 kb on - strand, within RS_RS14070at 3028.277 kb on + strandat 3028.515 kb on - strand, within RS_RS14075at 3028.679 kb on + strand, within RS_RS14075at 3028.680 kb on - strand, within RS_RS14075at 3028.680 kb on - strand, within RS_RS14075at 3028.754 kb on + strand, within RS_RS14075at 3028.757 kb on + strand, within RS_RS14075at 3028.758 kb on - strand, within RS_RS14075at 3028.940 kb on + strand, within RS_RS14075at 3028.941 kb on - strand, within RS_RS14075at 3029.056 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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3,026,474 - RS_RS14060 0.66 -1.1
3,026,499 - RS_RS14060 0.71 +0.4
3,026,586 + RS_RS14060 0.87 +1.3
3,026,586 + RS_RS14060 0.87 -0.8
3,027,331 + +0.4
3,027,331 + +0.8
3,027,332 - -0.6
3,027,385 + -0.5
3,027,458 + RS_RS14070 0.10 +0.9
3,027,458 + RS_RS14070 0.10 -2.8
3,027,459 - RS_RS14070 0.10 +0.1
3,027,459 - RS_RS14070 0.10 -1.8
3,027,491 - RS_RS14070 0.14 -0.7
3,027,584 - RS_RS14070 0.25 -0.6
3,027,584 - RS_RS14070 0.25 -1.7
3,027,676 + RS_RS14070 0.35 -0.9
3,027,695 - RS_RS14070 0.37 -0.4
3,028,277 + +0.4
3,028,515 - RS_RS14075 0.29 +0.4
3,028,679 + RS_RS14075 0.51 +0.9
3,028,680 - RS_RS14075 0.51 -1.4
3,028,680 - RS_RS14075 0.51 +2.4
3,028,754 + RS_RS14075 0.61 +0.6
3,028,757 + RS_RS14075 0.62 -0.5
3,028,758 - RS_RS14075 0.62 +1.0
3,028,940 + RS_RS14075 0.86 -2.1
3,028,941 - RS_RS14075 0.86 +0.6
3,029,056 + -1.4

Or see this region's nucleotide sequence