Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06530 and RS_RS25450 are separated by 290 nucleotides RS_RS25450 and RS_RS06535 are separated by 74 nucleotides RS_RS06535 and RS_RS06540 are separated by 115 nucleotides RS_RS06540 and RS_RS06545 are separated by 247 nucleotides
RS_RS06530: RS_RS06530 - hypothetical protein, at 1,388,632 to 1,390,359
_RS06530
RS_RS25450: RS_RS25450 - hypothetical protein, at 1,390,650 to 1,390,854
_RS25450
RS_RS06535: RS_RS06535 - hypothetical protein, at 1,390,929 to 1,391,117
_RS06535
RS_RS06540: RS_RS06540 - LexA repressor, at 1,391,233 to 1,391,883
_RS06540
RS_RS06545: RS_RS06545 - ferredoxin--NADP reductase, at 1,392,131 to 1,392,907
_RS06545
Position (kb) 1391
1392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1390.243 kb on - strand at 1390.357 kb on + strand at 1390.437 kb on + strand at 1390.438 kb on - strand at 1390.438 kb on - strand at 1390.464 kb on + strand at 1390.599 kb on + strand at 1390.704 kb on + strand, within RS_RS25450 at 1390.704 kb on + strand, within RS_RS25450 at 1390.705 kb on - strand, within RS_RS25450 at 1390.705 kb on - strand, within RS_RS25450 at 1390.867 kb on - strand at 1390.897 kb on + strand at 1390.898 kb on - strand at 1391.038 kb on + strand, within RS_RS06535 at 1391.038 kb on + strand, within RS_RS06535 at 1391.175 kb on + strand at 1391.951 kb on - strand at 1392.034 kb on + strand at 1392.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 1,390,243 - -0.2 1,390,357 + +0.1 1,390,437 + -0.8 1,390,438 - -1.3 1,390,438 - -3.0 1,390,464 + -1.0 1,390,599 + +0.2 1,390,704 + RS_RS25450 0.26 +0.3 1,390,704 + RS_RS25450 0.26 +1.7 1,390,705 - RS_RS25450 0.27 -1.1 1,390,705 - RS_RS25450 0.27 -0.7 1,390,867 - +0.5 1,390,897 + -0.4 1,390,898 - -0.9 1,391,038 + RS_RS06535 0.58 -0.8 1,391,038 + RS_RS06535 0.58 -1.8 1,391,175 + -0.5 1,391,951 - +2.5 1,392,034 + +0.6 1,392,035 - -0.2
Or see this region's nucleotide sequence