Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02225 and RS_RS02230 are separated by 141 nucleotides RS_RS02230 and RS_RS02235 are separated by 11 nucleotides RS_RS02235 and RS_RS02240 are separated by 128 nucleotides
RS_RS02225: RS_RS02225 - threonine ammonia-lyase, biosynthetic, at 476,953 to 478,476
_RS02225
RS_RS02230: RS_RS02230 - potassium channel protein, at 478,618 to 479,541
_RS02230
RS_RS02235: RS_RS02235 - hypothetical protein, at 479,553 to 480,032
_RS02235
RS_RS02240: RS_RS02240 - membrane protein, at 480,161 to 481,408
_RS02240
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 478.595 kb on + strand at 478.596 kb on - strand at 478.729 kb on + strand, within RS_RS02230 at 478.730 kb on - strand, within RS_RS02230 at 478.730 kb on - strand, within RS_RS02230 at 479.185 kb on + strand, within RS_RS02230 at 479.186 kb on - strand, within RS_RS02230 at 479.194 kb on + strand, within RS_RS02230 at 479.195 kb on - strand, within RS_RS02230 at 479.428 kb on + strand, within RS_RS02230 at 479.429 kb on - strand, within RS_RS02230 at 479.555 kb on - strand at 479.710 kb on + strand, within RS_RS02235 at 479.711 kb on - strand, within RS_RS02235 at 479.791 kb on + strand, within RS_RS02235 at 479.791 kb on + strand, within RS_RS02235 at 479.791 kb on + strand, within RS_RS02235 at 479.792 kb on - strand, within RS_RS02235 at 480.077 kb on + strand at 480.079 kb on + strand at 480.079 kb on + strand at 480.079 kb on + strand at 480.079 kb on + strand at 480.080 kb on - strand at 480.080 kb on - strand at 480.080 kb on - strand at 480.080 kb on - strand at 480.080 kb on - strand at 480.080 kb on - strand at 480.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 478,595 + +1.3 478,596 - -0.9 478,729 + RS_RS02230 0.12 +0.0 478,730 - RS_RS02230 0.12 +1.4 478,730 - RS_RS02230 0.12 -0.2 479,185 + RS_RS02230 0.61 +0.8 479,186 - RS_RS02230 0.61 +0.5 479,194 + RS_RS02230 0.62 -0.6 479,195 - RS_RS02230 0.62 +0.5 479,428 + RS_RS02230 0.88 +1.4 479,429 - RS_RS02230 0.88 +0.0 479,555 - +1.1 479,710 + RS_RS02235 0.33 -1.0 479,711 - RS_RS02235 0.33 -0.4 479,791 + RS_RS02235 0.50 -0.4 479,791 + RS_RS02235 0.50 -1.9 479,791 + RS_RS02235 0.50 -0.4 479,792 - RS_RS02235 0.50 -2.8 480,077 + +0.9 480,079 + -0.1 480,079 + -0.2 480,079 + -1.7 480,079 + -0.4 480,080 - -1.4 480,080 - -0.8 480,080 - +1.3 480,080 - +0.2 480,080 - +1.8 480,080 - +1.0 480,080 - -0.4
Or see this region's nucleotide sequence