Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01380 and RS_RS01385 are separated by 19 nucleotides RS_RS01385 and RS_RS01390 are separated by 79 nucleotides RS_RS01390 and RS_RS01395 overlap by 1 nucleotides
RS_RS01380: RS_RS01380 - Zn-dependent hydrolase, at 314,264 to 315,343
_RS01380
RS_RS01385: RS_RS01385 - antibiotic biosynthesis monooxygenase, at 315,363 to 315,746
_RS01385
RS_RS01390: RS_RS01390 - hypothetical protein, at 315,826 to 316,671
_RS01390
RS_RS01395: RS_RS01395 - short-chain dehydrogenase, at 316,671 to 317,471
_RS01395
Position (kb) 315
316 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 314.772 kb on - strand, within RS_RS01380 at 314.772 kb on - strand, within RS_RS01380 at 314.772 kb on - strand, within RS_RS01380 at 314.774 kb on + strand, within RS_RS01380 at 314.774 kb on + strand, within RS_RS01380 at 314.774 kb on + strand, within RS_RS01380 at 314.775 kb on - strand, within RS_RS01380 at 314.775 kb on - strand, within RS_RS01380 at 314.904 kb on - strand, within RS_RS01380 at 315.011 kb on + strand, within RS_RS01380 at 315.032 kb on + strand, within RS_RS01380 at 315.032 kb on + strand, within RS_RS01380 at 315.033 kb on - strand, within RS_RS01380 at 315.033 kb on - strand, within RS_RS01380 at 315.436 kb on - strand, within RS_RS01385 at 315.438 kb on + strand, within RS_RS01385 at 315.438 kb on + strand, within RS_RS01385 at 315.439 kb on - strand, within RS_RS01385 at 315.687 kb on + strand, within RS_RS01385 at 315.688 kb on - strand, within RS_RS01385 at 315.688 kb on - strand, within RS_RS01385 at 315.723 kb on + strand at 315.723 kb on + strand at 315.857 kb on + strand at 315.917 kb on + strand, within RS_RS01390 at 315.918 kb on - strand, within RS_RS01390 at 315.974 kb on + strand, within RS_RS01390 at 316.161 kb on + strand, within RS_RS01390 at 316.162 kb on - strand, within RS_RS01390 at 316.163 kb on + strand, within RS_RS01390 at 316.163 kb on + strand, within RS_RS01390 at 316.163 kb on + strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.209 kb on - strand, within RS_RS01390 at 316.325 kb on + strand, within RS_RS01390 at 316.325 kb on + strand, within RS_RS01390 at 316.325 kb on + strand, within RS_RS01390 at 316.327 kb on + strand, within RS_RS01390 at 316.327 kb on + strand, within RS_RS01390 at 316.327 kb on + strand, within RS_RS01390 at 316.328 kb on - strand, within RS_RS01390 at 316.328 kb on - strand, within RS_RS01390 at 316.328 kb on - strand, within RS_RS01390 at 316.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 314,772 - RS_RS01380 0.47 +0.4 314,772 - RS_RS01380 0.47 +0.2 314,772 - RS_RS01380 0.47 +0.4 314,774 + RS_RS01380 0.47 -2.1 314,774 + RS_RS01380 0.47 -3.8 314,774 + RS_RS01380 0.47 +0.1 314,775 - RS_RS01380 0.47 -0.3 314,775 - RS_RS01380 0.47 +0.2 314,904 - RS_RS01380 0.59 -0.2 315,011 + RS_RS01380 0.69 -1.5 315,032 + RS_RS01380 0.71 +0.4 315,032 + RS_RS01380 0.71 -0.4 315,033 - RS_RS01380 0.71 -0.4 315,033 - RS_RS01380 0.71 +0.7 315,436 - RS_RS01385 0.19 -3.2 315,438 + RS_RS01385 0.20 +0.2 315,438 + RS_RS01385 0.20 +1.4 315,439 - RS_RS01385 0.20 +0.0 315,687 + RS_RS01385 0.84 -1.2 315,688 - RS_RS01385 0.85 +0.4 315,688 - RS_RS01385 0.85 -0.7 315,723 + -0.3 315,723 + +1.0 315,857 + -0.1 315,917 + RS_RS01390 0.11 +0.8 315,918 - RS_RS01390 0.11 +1.1 315,974 + RS_RS01390 0.17 -1.6 316,161 + RS_RS01390 0.40 -0.1 316,162 - RS_RS01390 0.40 -0.1 316,163 + RS_RS01390 0.40 -0.2 316,163 + RS_RS01390 0.40 -0.6 316,163 + RS_RS01390 0.40 -0.2 316,164 - RS_RS01390 0.40 -0.7 316,164 - RS_RS01390 0.40 -0.8 316,164 - RS_RS01390 0.40 +1.0 316,164 - RS_RS01390 0.40 +0.3 316,164 - RS_RS01390 0.40 +0.6 316,164 - RS_RS01390 0.40 -0.6 316,209 - RS_RS01390 0.45 -0.3 316,325 + RS_RS01390 0.59 -0.1 316,325 + RS_RS01390 0.59 +0.3 316,325 + RS_RS01390 0.59 +0.7 316,327 + RS_RS01390 0.59 +0.3 316,327 + RS_RS01390 0.59 +0.7 316,327 + RS_RS01390 0.59 -0.2 316,328 - RS_RS01390 0.59 +1.2 316,328 - RS_RS01390 0.59 +1.1 316,328 - RS_RS01390 0.59 -1.0 316,727 - +0.0
Or see this region's nucleotide sequence