Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00625

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00610 and RS_RS00615 overlap by 8 nucleotidesRS_RS00615 and RS_RS00620 are separated by 120 nucleotidesRS_RS00620 and RS_RS00625 are separated by 226 nucleotidesRS_RS00625 and RS_RS00630 are separated by 308 nucleotidesRS_RS00630 and RS_RS00635 are separated by 141 nucleotides RS_RS00610: RS_RS00610 - type II toxin-antitoxin system RelE/ParE family toxin, at 147,209 to 147,574 _RS00610 RS_RS00615: RS_RS00615 - transcriptional regulator, at 147,567 to 147,887 _RS00615 RS_RS00620: RS_RS00620 - hypothetical protein, at 148,008 to 148,229 _RS00620 RS_RS00625: RS_RS00625 - YncE family protein, at 148,456 to 149,898 _RS00625 RS_RS00630: RS_RS00630 - Lrp/AsnC family transcriptional regulator, at 150,207 to 150,665 _RS00630 RS_RS00635: RS_RS00635 - glutathione S-transferase, at 150,807 to 151,415 _RS00635 Position (kb) 148 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 147.612 kb on - strand, within RS_RS00615at 147.768 kb on + strand, within RS_RS00615at 147.768 kb on + strand, within RS_RS00615at 147.769 kb on - strand, within RS_RS00615at 147.776 kb on + strand, within RS_RS00615at 147.777 kb on - strand, within RS_RS00615at 148.179 kb on + strand, within RS_RS00620at 148.179 kb on + strand, within RS_RS00620at 148.180 kb on - strand, within RS_RS00620at 148.180 kb on - strand, within RS_RS00620at 148.288 kb on + strandat 148.289 kb on - strandat 148.299 kb on + strandat 148.457 kb on + strandat 148.458 kb on - strandat 148.586 kb on + strandat 148.586 kb on + strandat 148.586 kb on + strandat 148.586 kb on + strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.689 kb on - strand, within RS_RS00625at 148.724 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.865 kb on + strand, within RS_RS00625at 148.866 kb on - strand, within RS_RS00625at 148.898 kb on + strand, within RS_RS00625at 148.898 kb on + strand, within RS_RS00625at 148.898 kb on + strand, within RS_RS00625at 149.019 kb on - strand, within RS_RS00625at 149.055 kb on - strand, within RS_RS00625at 149.055 kb on - strand, within RS_RS00625at 149.055 kb on - strand, within RS_RS00625at 149.156 kb on + strand, within RS_RS00625at 149.298 kb on - strand, within RS_RS00625at 149.402 kb on + strand, within RS_RS00625at 149.402 kb on + strand, within RS_RS00625at 149.402 kb on + strand, within RS_RS00625at 149.403 kb on - strand, within RS_RS00625at 149.403 kb on - strand, within RS_RS00625at 149.439 kb on - strand, within RS_RS00625at 149.564 kb on + strand, within RS_RS00625at 149.565 kb on - strand, within RS_RS00625at 149.993 kb on + strandat 149.993 kb on + strandat 149.993 kb on + strandat 149.994 kb on - strandat 149.994 kb on - strandat 149.994 kb on - strandat 149.994 kb on - strandat 150.019 kb on + strandat 150.057 kb on + strandat 150.058 kb on - strandat 150.424 kb on + strand, within RS_RS00630at 150.424 kb on + strand, within RS_RS00630at 150.424 kb on + strand, within RS_RS00630at 150.424 kb on + strand, within RS_RS00630at 150.425 kb on - strand, within RS_RS00630at 150.654 kb on - strandat 150.721 kb on + strandat 150.721 kb on + strandat 150.721 kb on + strandat 150.721 kb on + strandat 150.721 kb on + strandat 150.722 kb on - strandat 150.722 kb on - strandat 150.722 kb on - strandat 150.722 kb on - strandat 150.753 kb on + strandat 150.754 kb on - strandat 150.754 kb on - strandat 150.758 kb on + strandat 150.758 kb on + strandat 150.759 kb on - strandat 150.837 kb on + strandat 150.837 kb on + strandat 150.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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147,612 - RS_RS00615 0.14 +1.6
147,768 + RS_RS00615 0.63 -1.6
147,768 + RS_RS00615 0.63 +0.4
147,769 - RS_RS00615 0.63 +0.7
147,776 + RS_RS00615 0.65 -0.0
147,777 - RS_RS00615 0.65 +0.6
148,179 + RS_RS00620 0.77 -0.8
148,179 + RS_RS00620 0.77 +0.5
148,180 - RS_RS00620 0.77 +0.6
148,180 - RS_RS00620 0.77 -0.4
148,288 + +1.8
148,289 - -0.1
148,299 + -0.4
148,457 + -0.7
148,458 - -0.6
148,586 + +0.5
148,586 + +0.5
148,586 + +1.3
148,586 + +0.5
148,587 - -0.3
148,587 - -0.4
148,587 - -1.0
148,587 - -0.2
148,587 - +0.2
148,587 - +0.1
148,689 - RS_RS00625 0.16 -2.2
148,724 + RS_RS00625 0.19 -0.6
148,829 + RS_RS00625 0.26 -0.7
148,829 + RS_RS00625 0.26 -0.3
148,829 + RS_RS00625 0.26 -2.6
148,829 + RS_RS00625 0.26 -0.8
148,829 + RS_RS00625 0.26 +0.5
148,829 + RS_RS00625 0.26 -0.7
148,829 + RS_RS00625 0.26 -2.1
148,830 - RS_RS00625 0.26 +0.9
148,830 - RS_RS00625 0.26 +1.2
148,830 - RS_RS00625 0.26 -0.1
148,830 - RS_RS00625 0.26 +0.6
148,830 - RS_RS00625 0.26 -1.3
148,831 + RS_RS00625 0.26 -0.1
148,831 + RS_RS00625 0.26 -0.6
148,831 + RS_RS00625 0.26 +1.3
148,831 + RS_RS00625 0.26 -0.3
148,831 + RS_RS00625 0.26 -1.9
148,831 + RS_RS00625 0.26 -0.7
148,831 + RS_RS00625 0.26 -0.1
148,831 + RS_RS00625 0.26 +0.1
148,832 - RS_RS00625 0.26 +0.2
148,832 - RS_RS00625 0.26 +0.3
148,832 - RS_RS00625 0.26 -3.0
148,832 - RS_RS00625 0.26 +0.5
148,832 - RS_RS00625 0.26 +0.5
148,865 + RS_RS00625 0.28 +1.1
148,866 - RS_RS00625 0.28 -0.0
148,898 + RS_RS00625 0.31 -0.9
148,898 + RS_RS00625 0.31 -0.3
148,898 + RS_RS00625 0.31 +0.0
149,019 - RS_RS00625 0.39 -0.2
149,055 - RS_RS00625 0.42 -0.4
149,055 - RS_RS00625 0.42 +0.2
149,055 - RS_RS00625 0.42 +1.3
149,156 + RS_RS00625 0.49 +0.8
149,298 - RS_RS00625 0.58 -0.8
149,402 + RS_RS00625 0.66 +0.5
149,402 + RS_RS00625 0.66 +0.2
149,402 + RS_RS00625 0.66 +0.7
149,403 - RS_RS00625 0.66 -0.0
149,403 - RS_RS00625 0.66 +0.0
149,439 - RS_RS00625 0.68 +3.0
149,564 + RS_RS00625 0.77 +0.9
149,565 - RS_RS00625 0.77 -0.2
149,993 + +0.1
149,993 + -0.6
149,993 + +0.7
149,994 - +0.7
149,994 - +0.4
149,994 - -0.9
149,994 - +1.4
150,019 + -0.3
150,057 + -0.9
150,058 - +0.2
150,424 + RS_RS00630 0.47 +0.5
150,424 + RS_RS00630 0.47 -0.3
150,424 + RS_RS00630 0.47 -1.2
150,424 + RS_RS00630 0.47 +0.1
150,425 - RS_RS00630 0.47 -1.6
150,654 - -1.9
150,721 + +0.5
150,721 + -0.2
150,721 + +1.2
150,721 + -0.0
150,721 + +0.1
150,722 - -2.1
150,722 - +0.5
150,722 - -3.5
150,722 - -1.8
150,753 + -1.3
150,754 - +0.1
150,754 - +0.5
150,758 + -0.8
150,758 + -1.6
150,759 - +0.4
150,837 + -0.8
150,837 + -0.0
150,837 + +0.6

Or see this region's nucleotide sequence