Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00510

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00505 and RS_RS00510 are separated by 260 nucleotidesRS_RS00510 and RS_RS00515 overlap by 3 nucleotides RS_RS00505: RS_RS00505 - hypothetical protein, at 114,282 to 117,731 _RS00505 RS_RS00510: RS_RS00510 - IS630 family transposase ISRso5, at 117,992 to 119,083 _RS00510 RS_RS00515: RS_RS00515 - hemolysin, at 119,081 to 121,909 _RS00515 Position (kb) 117 118 119 120Strain fitness (log2 ratio) -2 -1 0 1at 117.947 kb on - strandat 117.957 kb on - strandat 117.957 kb on - strandat 119.228 kb on - strandat 119.275 kb on + strandat 119.275 kb on + strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.276 kb on - strandat 119.432 kb on + strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.446 kb on - strand, within RS_RS00515at 119.449 kb on - strand, within RS_RS00515at 119.449 kb on - strand, within RS_RS00515at 119.511 kb on + strand, within RS_RS00515at 119.554 kb on + strand, within RS_RS00515at 119.555 kb on - strand, within RS_RS00515at 119.588 kb on - strand, within RS_RS00515at 119.588 kb on - strand, within RS_RS00515at 119.719 kb on + strand, within RS_RS00515at 119.719 kb on + strand, within RS_RS00515at 119.719 kb on + strand, within RS_RS00515at 119.720 kb on - strand, within RS_RS00515at 119.720 kb on - strand, within RS_RS00515at 119.851 kb on + strand, within RS_RS00515at 120.021 kb on + strand, within RS_RS00515at 120.021 kb on + strand, within RS_RS00515at 120.022 kb on - strand, within RS_RS00515at 120.022 kb on - strand, within RS_RS00515

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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117,947 - -1.5
117,957 - +0.4
117,957 - +0.2
119,228 - +1.0
119,275 + -0.0
119,275 + -0.4
119,276 - +0.1
119,276 - +0.0
119,276 - -0.3
119,276 - -1.5
119,276 - -0.4
119,276 - -0.1
119,276 - +0.5
119,276 - -0.2
119,432 + RS_RS00515 0.12 +1.4
119,446 - RS_RS00515 0.13 +0.1
119,446 - RS_RS00515 0.13 +1.1
119,446 - RS_RS00515 0.13 -1.3
119,446 - RS_RS00515 0.13 +0.4
119,449 - RS_RS00515 0.13 +0.5
119,449 - RS_RS00515 0.13 -0.2
119,511 + RS_RS00515 0.15 -0.6
119,554 + RS_RS00515 0.17 +0.5
119,555 - RS_RS00515 0.17 -0.1
119,588 - RS_RS00515 0.18 -0.4
119,588 - RS_RS00515 0.18 +0.8
119,719 + RS_RS00515 0.23 -0.2
119,719 + RS_RS00515 0.23 -0.1
119,719 + RS_RS00515 0.23 +0.8
119,720 - RS_RS00515 0.23 -0.4
119,720 - RS_RS00515 0.23 -0.5
119,851 + RS_RS00515 0.27 -0.5
120,021 + RS_RS00515 0.33 +0.8
120,021 + RS_RS00515 0.33 -2.3
120,022 - RS_RS00515 0.33 -0.1
120,022 - RS_RS00515 0.33 -1.4

Or see this region's nucleotide sequence