Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00495 and RS_RS00500 are separated by 34 nucleotides RS_RS00500 and RS_RS00505 are separated by 201 nucleotides RS_RS00505 and RS_RS00510 are separated by 260 nucleotides
RS_RS00495: RS_RS00495 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 112,778 to 113,683
_RS00495
RS_RS00500: RS_RS00500 - hypothetical protein, at 113,718 to 114,080
_RS00500
RS_RS00505: RS_RS00505 - hypothetical protein, at 114,282 to 117,731
_RS00505
RS_RS00510: RS_RS00510 - IS630 family transposase ISRso5, at 117,992 to 119,083
_RS00510
Position (kb) 114
115
116
117
118 Strain fitness (log2 ratio) -2
-1
0
1
2 at 113.960 kb on + strand, within RS_RS00500 at 113.960 kb on + strand, within RS_RS00500 at 113.960 kb on + strand, within RS_RS00500 at 113.961 kb on - strand, within RS_RS00500 at 114.324 kb on + strand at 114.324 kb on + strand at 114.324 kb on + strand at 114.325 kb on - strand at 114.417 kb on + strand at 114.466 kb on + strand at 114.467 kb on - strand at 114.593 kb on + strand at 114.594 kb on - strand at 114.630 kb on - strand, within RS_RS00505 at 114.650 kb on + strand, within RS_RS00505 at 114.650 kb on + strand, within RS_RS00505 at 114.650 kb on + strand, within RS_RS00505 at 114.651 kb on - strand, within RS_RS00505 at 114.652 kb on + strand, within RS_RS00505 at 114.652 kb on + strand, within RS_RS00505 at 114.652 kb on + strand, within RS_RS00505 at 114.652 kb on + strand, within RS_RS00505 at 114.652 kb on - strand, within RS_RS00505 at 114.653 kb on - strand, within RS_RS00505 at 114.653 kb on - strand, within RS_RS00505 at 114.718 kb on + strand, within RS_RS00505 at 114.773 kb on + strand, within RS_RS00505 at 114.988 kb on + strand, within RS_RS00505 at 114.988 kb on + strand, within RS_RS00505 at 114.989 kb on - strand, within RS_RS00505 at 114.989 kb on - strand, within RS_RS00505 at 115.457 kb on + strand, within RS_RS00505 at 115.457 kb on + strand, within RS_RS00505 at 115.457 kb on + strand, within RS_RS00505 at 115.595 kb on - strand, within RS_RS00505 at 116.129 kb on + strand, within RS_RS00505 at 116.129 kb on + strand, within RS_RS00505 at 116.129 kb on + strand, within RS_RS00505 at 116.607 kb on - strand, within RS_RS00505 at 116.655 kb on + strand, within RS_RS00505 at 116.656 kb on - strand, within RS_RS00505 at 117.947 kb on - strand at 117.957 kb on - strand at 117.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 113,960 + RS_RS00500 0.67 -0.1 113,960 + RS_RS00500 0.67 +0.1 113,960 + RS_RS00500 0.67 +0.3 113,961 - RS_RS00500 0.67 +2.3 114,324 + -2.6 114,324 + -0.6 114,324 + -0.4 114,325 - -0.9 114,417 + -1.3 114,466 + +0.3 114,467 - -1.5 114,593 + -0.1 114,594 - -0.2 114,630 - RS_RS00505 0.10 -2.5 114,650 + RS_RS00505 0.11 +0.8 114,650 + RS_RS00505 0.11 +0.5 114,650 + RS_RS00505 0.11 +1.6 114,651 - RS_RS00505 0.11 -1.3 114,652 + RS_RS00505 0.11 -0.7 114,652 + RS_RS00505 0.11 -1.0 114,652 + RS_RS00505 0.11 -0.0 114,652 + RS_RS00505 0.11 -1.3 114,652 - RS_RS00505 0.11 +1.2 114,653 - RS_RS00505 0.11 -0.7 114,653 - RS_RS00505 0.11 -0.8 114,718 + RS_RS00505 0.13 +0.3 114,773 + RS_RS00505 0.14 +0.6 114,988 + RS_RS00505 0.20 -1.9 114,988 + RS_RS00505 0.20 +0.8 114,989 - RS_RS00505 0.20 -0.5 114,989 - RS_RS00505 0.20 -2.2 115,457 + RS_RS00505 0.34 -0.7 115,457 + RS_RS00505 0.34 -1.1 115,457 + RS_RS00505 0.34 +0.0 115,595 - RS_RS00505 0.38 -1.2 116,129 + RS_RS00505 0.54 +0.4 116,129 + RS_RS00505 0.54 +1.7 116,129 + RS_RS00505 0.54 +0.6 116,607 - RS_RS00505 0.67 -1.0 116,655 + RS_RS00505 0.69 -0.4 116,656 - RS_RS00505 0.69 -0.4 117,947 - -1.5 117,957 - +0.4 117,957 - +0.2
Or see this region's nucleotide sequence