Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_919

Experiment: bismuth(III) chloride 0.000025 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_918 and Pf6N2E2_919 are separated by 384 nucleotides Pf6N2E2_918 - FIG00956406: hypothetical protein, at 1,079,709 to 1,080,386 _918 Pf6N2E2_919 - FIG00954373: hypothetical protein, at 1,080,771 to 1,081,025 _919 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -1 0 1 2at 1079.774 kb on + strandat 1079.774 kb on + strandat 1079.774 kb on + strandat 1079.774 kb on + strandat 1079.774 kb on + strandat 1079.775 kb on - strandat 1079.775 kb on - strandat 1079.777 kb on - strand, within Pf6N2E2_918at 1079.777 kb on - strand, within Pf6N2E2_918at 1079.777 kb on - strand, within Pf6N2E2_918at 1079.956 kb on - strand, within Pf6N2E2_918at 1079.956 kb on - strand, within Pf6N2E2_918at 1079.959 kb on + strand, within Pf6N2E2_918at 1079.959 kb on + strand, within Pf6N2E2_918at 1079.959 kb on + strand, within Pf6N2E2_918at 1079.959 kb on + strand, within Pf6N2E2_918at 1079.959 kb on + strand, within Pf6N2E2_918at 1079.959 kb on + strand, within Pf6N2E2_918at 1079.960 kb on - strand, within Pf6N2E2_918at 1079.960 kb on - strand, within Pf6N2E2_918at 1079.960 kb on - strand, within Pf6N2E2_918at 1079.960 kb on - strand, within Pf6N2E2_918at 1079.960 kb on - strand, within Pf6N2E2_918at 1079.960 kb on - strand, within Pf6N2E2_918at 1080.042 kb on + strand, within Pf6N2E2_918at 1080.065 kb on - strand, within Pf6N2E2_918at 1080.190 kb on + strand, within Pf6N2E2_918at 1080.190 kb on + strand, within Pf6N2E2_918at 1080.190 kb on + strand, within Pf6N2E2_918at 1080.191 kb on - strand, within Pf6N2E2_918at 1080.193 kb on + strand, within Pf6N2E2_918at 1080.194 kb on - strand, within Pf6N2E2_918at 1080.194 kb on - strand, within Pf6N2E2_918at 1080.419 kb on - strandat 1080.419 kb on - strandat 1080.683 kb on + strandat 1080.816 kb on + strand, within Pf6N2E2_919at 1080.907 kb on + strand, within Pf6N2E2_919at 1080.907 kb on + strand, within Pf6N2E2_919at 1081.012 kb on + strandat 1081.073 kb on + strandat 1081.089 kb on + strandat 1081.194 kb on + strandat 1081.317 kb on + strandat 1081.318 kb on - strandat 1081.481 kb on + strandat 1081.482 kb on - strandat 1081.494 kb on + strandat 1081.494 kb on + strandat 1081.494 kb on + strandat 1081.571 kb on + strandat 1081.575 kb on + strandat 1081.598 kb on + strandat 1081.602 kb on + strandat 1081.768 kb on - strandat 1081.903 kb on + strandat 1081.937 kb on + strandat 1081.938 kb on - strandat 1081.950 kb on - strandat 1081.954 kb on - strandat 1081.978 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction bismuth(III) chloride 0.000025 M
remove
1,079,774 + +1.2
1,079,774 + -0.2
1,079,774 + -0.1
1,079,774 + -0.3
1,079,774 + +2.4
1,079,775 - -0.1
1,079,775 - +0.5
1,079,777 - Pf6N2E2_918 0.10 -0.1
1,079,777 - Pf6N2E2_918 0.10 +0.9
1,079,777 - Pf6N2E2_918 0.10 +1.0
1,079,956 - Pf6N2E2_918 0.36 +1.1
1,079,956 - Pf6N2E2_918 0.36 +0.5
1,079,959 + Pf6N2E2_918 0.37 +0.4
1,079,959 + Pf6N2E2_918 0.37 -0.4
1,079,959 + Pf6N2E2_918 0.37 -0.4
1,079,959 + Pf6N2E2_918 0.37 -0.1
1,079,959 + Pf6N2E2_918 0.37 -0.5
1,079,959 + Pf6N2E2_918 0.37 +1.4
1,079,960 - Pf6N2E2_918 0.37 -0.8
1,079,960 - Pf6N2E2_918 0.37 +0.0
1,079,960 - Pf6N2E2_918 0.37 +0.2
1,079,960 - Pf6N2E2_918 0.37 +0.6
1,079,960 - Pf6N2E2_918 0.37 +0.0
1,079,960 - Pf6N2E2_918 0.37 +0.3
1,080,042 + Pf6N2E2_918 0.49 +1.0
1,080,065 - Pf6N2E2_918 0.53 -1.1
1,080,190 + Pf6N2E2_918 0.71 -0.2
1,080,190 + Pf6N2E2_918 0.71 +0.4
1,080,190 + Pf6N2E2_918 0.71 -0.1
1,080,191 - Pf6N2E2_918 0.71 -0.3
1,080,193 + Pf6N2E2_918 0.71 -0.5
1,080,194 - Pf6N2E2_918 0.72 +0.9
1,080,194 - Pf6N2E2_918 0.72 -0.5
1,080,419 - +0.9
1,080,419 - +0.5
1,080,683 + +0.7
1,080,816 + Pf6N2E2_919 0.18 -0.6
1,080,907 + Pf6N2E2_919 0.53 -1.2
1,080,907 + Pf6N2E2_919 0.53 -0.3
1,081,012 + -0.7
1,081,073 + -0.0
1,081,089 + -0.6
1,081,194 + -0.2
1,081,317 + +0.2
1,081,318 - +0.4
1,081,481 + +1.1
1,081,482 - -0.3
1,081,494 + +0.0
1,081,494 + +0.7
1,081,494 + -0.1
1,081,571 + +0.1
1,081,575 + +0.4
1,081,598 + -1.0
1,081,602 + -0.0
1,081,768 - -0.0
1,081,903 + +0.6
1,081,937 + +0.1
1,081,938 - +0.4
1,081,950 - +1.8
1,081,954 - +0.1
1,081,978 - -0.7

Or see this region's nucleotide sequence