Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5761

Experiment: bismuth(III) chloride 0.000025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5760 and Pf6N2E2_5761 are separated by 250 nucleotidesPf6N2E2_5761 and Pf6N2E2_5762 are separated by 103 nucleotides Pf6N2E2_5760 - Sensory box histidine kinase/response regulator, at 6,572,582 to 6,576,052 _5760 Pf6N2E2_5761 - Transcriptional regulator, TetR family, at 6,576,303 to 6,576,842 _5761 Pf6N2E2_5762 - Permeases of the major facilitator superfamily, at 6,576,946 to 6,578,139 _5762 Position (kb) 6576 6577Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6575.346 kb on + strand, within Pf6N2E2_5760at 6575.347 kb on - strand, within Pf6N2E2_5760at 6575.404 kb on - strand, within Pf6N2E2_5760at 6575.412 kb on + strand, within Pf6N2E2_5760at 6575.412 kb on + strand, within Pf6N2E2_5760at 6575.412 kb on + strand, within Pf6N2E2_5760at 6575.413 kb on - strand, within Pf6N2E2_5760at 6575.413 kb on - strand, within Pf6N2E2_5760at 6575.413 kb on - strand, within Pf6N2E2_5760at 6575.528 kb on + strand, within Pf6N2E2_5760at 6575.528 kb on + strand, within Pf6N2E2_5760at 6575.529 kb on - strand, within Pf6N2E2_5760at 6575.536 kb on + strand, within Pf6N2E2_5760at 6575.537 kb on - strand, within Pf6N2E2_5760at 6575.537 kb on - strand, within Pf6N2E2_5760at 6575.661 kb on + strand, within Pf6N2E2_5760at 6575.661 kb on + strand, within Pf6N2E2_5760at 6575.661 kb on + strand, within Pf6N2E2_5760at 6575.662 kb on - strand, within Pf6N2E2_5760at 6575.811 kb on - strandat 6575.835 kb on + strandat 6575.835 kb on + strandat 6575.836 kb on - strandat 6575.836 kb on - strandat 6575.907 kb on + strandat 6575.907 kb on + strandat 6575.908 kb on - strandat 6575.908 kb on - strandat 6575.908 kb on - strandat 6575.908 kb on - strandat 6575.908 kb on - strandat 6575.928 kb on + strandat 6575.928 kb on + strandat 6575.928 kb on + strandat 6575.928 kb on + strandat 6575.928 kb on + strandat 6575.929 kb on - strandat 6575.929 kb on - strandat 6575.929 kb on - strandat 6575.980 kb on - strandat 6576.007 kb on + strandat 6576.007 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.009 kb on + strandat 6576.010 kb on - strandat 6576.010 kb on - strandat 6576.010 kb on - strandat 6576.010 kb on - strandat 6576.252 kb on + strandat 6576.252 kb on + strandat 6576.253 kb on - strandat 6576.253 kb on - strandat 6576.253 kb on - strandat 6576.304 kb on + strandat 6576.562 kb on + strand, within Pf6N2E2_5761at 6576.563 kb on - strand, within Pf6N2E2_5761at 6576.685 kb on + strand, within Pf6N2E2_5761at 6576.809 kb on + strandat 6576.810 kb on - strandat 6576.822 kb on + strandat 6576.926 kb on + strandat 6576.927 kb on - strandat 6576.980 kb on + strandat 6576.980 kb on + strandat 6576.981 kb on - strandat 6577.039 kb on + strandat 6577.039 kb on + strandat 6577.039 kb on + strandat 6577.039 kb on + strandat 6577.039 kb on + strandat 6577.040 kb on - strandat 6577.040 kb on - strandat 6577.040 kb on - strandat 6577.049 kb on - strandat 6577.102 kb on + strand, within Pf6N2E2_5762at 6577.102 kb on + strand, within Pf6N2E2_5762at 6577.103 kb on - strand, within Pf6N2E2_5762at 6577.153 kb on + strand, within Pf6N2E2_5762at 6577.154 kb on - strand, within Pf6N2E2_5762at 6577.197 kb on + strand, within Pf6N2E2_5762at 6577.198 kb on - strand, within Pf6N2E2_5762at 6577.198 kb on - strand, within Pf6N2E2_5762at 6577.435 kb on + strand, within Pf6N2E2_5762at 6577.474 kb on + strand, within Pf6N2E2_5762at 6577.474 kb on + strand, within Pf6N2E2_5762at 6577.474 kb on + strand, within Pf6N2E2_5762at 6577.474 kb on + strand, within Pf6N2E2_5762at 6577.475 kb on - strand, within Pf6N2E2_5762at 6577.475 kb on - strand, within Pf6N2E2_5762at 6577.475 kb on - strand, within Pf6N2E2_5762at 6577.475 kb on - strand, within Pf6N2E2_5762at 6577.476 kb on + strand, within Pf6N2E2_5762at 6577.476 kb on + strand, within Pf6N2E2_5762at 6577.621 kb on + strand, within Pf6N2E2_5762at 6577.621 kb on + strand, within Pf6N2E2_5762at 6577.621 kb on + strand, within Pf6N2E2_5762at 6577.621 kb on + strand, within Pf6N2E2_5762at 6577.622 kb on - strand, within Pf6N2E2_5762at 6577.622 kb on - strand, within Pf6N2E2_5762at 6577.622 kb on - strand, within Pf6N2E2_5762at 6577.622 kb on - strand, within Pf6N2E2_5762at 6577.622 kb on - strand, within Pf6N2E2_5762at 6577.729 kb on + strand, within Pf6N2E2_5762at 6577.729 kb on + strand, within Pf6N2E2_5762at 6577.730 kb on - strand, within Pf6N2E2_5762at 6577.730 kb on - strand, within Pf6N2E2_5762at 6577.730 kb on - strand, within Pf6N2E2_5762at 6577.731 kb on + strand, within Pf6N2E2_5762at 6577.731 kb on + strand, within Pf6N2E2_5762at 6577.732 kb on - strand, within Pf6N2E2_5762at 6577.732 kb on - strand, within Pf6N2E2_5762

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Per-strain Table

Position Strand Gene LocusTag Fraction bismuth(III) chloride 0.000025 M
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6,575,346 + Pf6N2E2_5760 0.80 +0.2
6,575,347 - Pf6N2E2_5760 0.80 +0.4
6,575,404 - Pf6N2E2_5760 0.81 +0.2
6,575,412 + Pf6N2E2_5760 0.82 +0.2
6,575,412 + Pf6N2E2_5760 0.82 +0.1
6,575,412 + Pf6N2E2_5760 0.82 -1.6
6,575,413 - Pf6N2E2_5760 0.82 +0.1
6,575,413 - Pf6N2E2_5760 0.82 +1.2
6,575,413 - Pf6N2E2_5760 0.82 -0.1
6,575,528 + Pf6N2E2_5760 0.85 -0.5
6,575,528 + Pf6N2E2_5760 0.85 +0.2
6,575,529 - Pf6N2E2_5760 0.85 +0.4
6,575,536 + Pf6N2E2_5760 0.85 +0.6
6,575,537 - Pf6N2E2_5760 0.85 +0.1
6,575,537 - Pf6N2E2_5760 0.85 -0.1
6,575,661 + Pf6N2E2_5760 0.89 -0.4
6,575,661 + Pf6N2E2_5760 0.89 -1.5
6,575,661 + Pf6N2E2_5760 0.89 -0.1
6,575,662 - Pf6N2E2_5760 0.89 -0.0
6,575,811 - +0.3
6,575,835 + -0.4
6,575,835 + +1.1
6,575,836 - -0.1
6,575,836 - -0.5
6,575,907 + +0.3
6,575,907 + +0.8
6,575,908 - +0.0
6,575,908 - -1.5
6,575,908 - -0.3
6,575,908 - +0.7
6,575,908 - +2.0
6,575,928 + -0.9
6,575,928 + -0.2
6,575,928 + -0.8
6,575,928 + -0.2
6,575,928 + +1.2
6,575,929 - +0.3
6,575,929 - -0.0
6,575,929 - -0.4
6,575,980 - -1.4
6,576,007 + -0.6
6,576,007 + -0.3
6,576,009 + -1.5
6,576,009 + -1.4
6,576,009 + -1.8
6,576,009 + -0.1
6,576,009 + -0.6
6,576,009 + +0.2
6,576,009 + -1.0
6,576,009 + -1.2
6,576,009 + -1.0
6,576,009 + +1.0
6,576,009 + -0.1
6,576,009 + +0.2
6,576,009 + +0.2
6,576,010 - +0.4
6,576,010 - +0.5
6,576,010 - -1.2
6,576,010 - +0.5
6,576,252 + -0.4
6,576,252 + +0.2
6,576,253 - -0.9
6,576,253 - -2.0
6,576,253 - -0.5
6,576,304 + -0.9
6,576,562 + Pf6N2E2_5761 0.48 -0.8
6,576,563 - Pf6N2E2_5761 0.48 -3.0
6,576,685 + Pf6N2E2_5761 0.71 -0.6
6,576,809 + -0.7
6,576,810 - +0.5
6,576,822 + +1.1
6,576,926 + +0.2
6,576,927 - -0.3
6,576,980 + +0.3
6,576,980 + -0.4
6,576,981 - +0.2
6,577,039 + +0.3
6,577,039 + +0.2
6,577,039 + +0.6
6,577,039 + -0.9
6,577,039 + -0.6
6,577,040 - +0.2
6,577,040 - +0.2
6,577,040 - +0.4
6,577,049 - +0.6
6,577,102 + Pf6N2E2_5762 0.13 +0.2
6,577,102 + Pf6N2E2_5762 0.13 -0.8
6,577,103 - Pf6N2E2_5762 0.13 +0.4
6,577,153 + Pf6N2E2_5762 0.17 -0.6
6,577,154 - Pf6N2E2_5762 0.17 +0.9
6,577,197 + Pf6N2E2_5762 0.21 -0.4
6,577,198 - Pf6N2E2_5762 0.21 +0.1
6,577,198 - Pf6N2E2_5762 0.21 -1.5
6,577,435 + Pf6N2E2_5762 0.41 -0.5
6,577,474 + Pf6N2E2_5762 0.44 +0.1
6,577,474 + Pf6N2E2_5762 0.44 +0.1
6,577,474 + Pf6N2E2_5762 0.44 -0.7
6,577,474 + Pf6N2E2_5762 0.44 -0.9
6,577,475 - Pf6N2E2_5762 0.44 +0.1
6,577,475 - Pf6N2E2_5762 0.44 +0.1
6,577,475 - Pf6N2E2_5762 0.44 -0.1
6,577,475 - Pf6N2E2_5762 0.44 -0.1
6,577,476 + Pf6N2E2_5762 0.44 -0.3
6,577,476 + Pf6N2E2_5762 0.44 -0.1
6,577,621 + Pf6N2E2_5762 0.57 +0.1
6,577,621 + Pf6N2E2_5762 0.57 +1.1
6,577,621 + Pf6N2E2_5762 0.57 +0.1
6,577,621 + Pf6N2E2_5762 0.57 -0.1
6,577,622 - Pf6N2E2_5762 0.57 +1.0
6,577,622 - Pf6N2E2_5762 0.57 +0.5
6,577,622 - Pf6N2E2_5762 0.57 -1.3
6,577,622 - Pf6N2E2_5762 0.57 -0.8
6,577,622 - Pf6N2E2_5762 0.57 +0.5
6,577,729 + Pf6N2E2_5762 0.66 +0.1
6,577,729 + Pf6N2E2_5762 0.66 +0.1
6,577,730 - Pf6N2E2_5762 0.66 -2.4
6,577,730 - Pf6N2E2_5762 0.66 -0.3
6,577,730 - Pf6N2E2_5762 0.66 -0.3
6,577,731 + Pf6N2E2_5762 0.66 +0.1
6,577,731 + Pf6N2E2_5762 0.66 -0.4
6,577,732 - Pf6N2E2_5762 0.66 +0.5
6,577,732 - Pf6N2E2_5762 0.66 +1.4

Or see this region's nucleotide sequence