Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_345

Experiment: bismuth(III) chloride 0.000025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_343 and Pf6N2E2_344 are separated by 4 nucleotidesPf6N2E2_344 and Pf6N2E2_345 are separated by 153 nucleotidesPf6N2E2_345 and Pf6N2E2_346 are separated by 69 nucleotidesPf6N2E2_346 and Pf6N2E2_347 are separated by 120 nucleotides Pf6N2E2_343 - VacJ-like lipoprotein precursor, at 410,495 to 411,226 _343 Pf6N2E2_344 - hypothetical protein, at 411,231 to 411,455 _344 Pf6N2E2_345 - Manganese transport protein MntH, at 411,609 to 412,910 _345 Pf6N2E2_346 - 3-demethylubiquinone-9 3-methyltransferase, at 412,980 to 413,459 _346 Pf6N2E2_347 - Endoribonuclease L-PSP, at 413,580 to 413,981 _347 Position (kb) 411 412 413Strain fitness (log2 ratio) -2 -1 0 1 2at 410.630 kb on + strand, within Pf6N2E2_343at 410.630 kb on + strand, within Pf6N2E2_343at 410.630 kb on + strand, within Pf6N2E2_343at 410.630 kb on + strand, within Pf6N2E2_343at 410.630 kb on + strand, within Pf6N2E2_343at 410.630 kb on + strand, within Pf6N2E2_343at 410.631 kb on - strand, within Pf6N2E2_343at 410.631 kb on - strand, within Pf6N2E2_343at 410.631 kb on - strand, within Pf6N2E2_343at 410.631 kb on - strand, within Pf6N2E2_343at 410.631 kb on - strand, within Pf6N2E2_343at 410.631 kb on - strand, within Pf6N2E2_343at 410.631 kb on - strand, within Pf6N2E2_343at 410.734 kb on - strand, within Pf6N2E2_343at 410.745 kb on + strand, within Pf6N2E2_343at 410.745 kb on + strand, within Pf6N2E2_343at 410.745 kb on + strand, within Pf6N2E2_343at 410.745 kb on + strand, within Pf6N2E2_343at 410.746 kb on - strand, within Pf6N2E2_343at 410.746 kb on - strand, within Pf6N2E2_343at 410.746 kb on - strand, within Pf6N2E2_343at 410.858 kb on - strand, within Pf6N2E2_343at 411.104 kb on + strand, within Pf6N2E2_343at 411.105 kb on - strandat 411.105 kb on - strand, within Pf6N2E2_343at 411.105 kb on - strand, within Pf6N2E2_343at 411.107 kb on + strand, within Pf6N2E2_343at 411.340 kb on - strand, within Pf6N2E2_344at 411.340 kb on - strand, within Pf6N2E2_344at 411.351 kb on + strand, within Pf6N2E2_344at 411.352 kb on - strand, within Pf6N2E2_344at 411.352 kb on - strand, within Pf6N2E2_344at 411.483 kb on + strandat 411.484 kb on - strandat 411.518 kb on + strandat 411.518 kb on + strandat 411.762 kb on + strand, within Pf6N2E2_345at 411.810 kb on + strand, within Pf6N2E2_345at 411.810 kb on + strand, within Pf6N2E2_345at 411.879 kb on + strand, within Pf6N2E2_345at 411.879 kb on + strand, within Pf6N2E2_345at 411.879 kb on + strand, within Pf6N2E2_345at 411.880 kb on - strand, within Pf6N2E2_345at 411.921 kb on + strand, within Pf6N2E2_345at 411.921 kb on + strand, within Pf6N2E2_345at 411.921 kb on + strand, within Pf6N2E2_345at 411.954 kb on + strand, within Pf6N2E2_345at 411.954 kb on + strand, within Pf6N2E2_345at 411.954 kb on + strand, within Pf6N2E2_345at 411.954 kb on + strand, within Pf6N2E2_345at 411.954 kb on + strand, within Pf6N2E2_345at 411.955 kb on - strand, within Pf6N2E2_345at 411.955 kb on - strand, within Pf6N2E2_345at 411.955 kb on - strand, within Pf6N2E2_345at 411.955 kb on - strand, within Pf6N2E2_345at 412.065 kb on - strand, within Pf6N2E2_345at 412.068 kb on + strand, within Pf6N2E2_345at 412.068 kb on + strand, within Pf6N2E2_345at 412.068 kb on + strand, within Pf6N2E2_345at 412.284 kb on + strand, within Pf6N2E2_345at 412.284 kb on + strand, within Pf6N2E2_345at 412.328 kb on + strand, within Pf6N2E2_345at 412.329 kb on - strand, within Pf6N2E2_345at 412.491 kb on + strand, within Pf6N2E2_345at 412.492 kb on - strand, within Pf6N2E2_345at 412.502 kb on + strand, within Pf6N2E2_345at 412.503 kb on - strand, within Pf6N2E2_345at 412.588 kb on + strand, within Pf6N2E2_345at 412.815 kb on + strandat 412.945 kb on - strandat 412.989 kb on - strandat 413.010 kb on + strandat 413.219 kb on + strand, within Pf6N2E2_346at 413.636 kb on - strand, within Pf6N2E2_347at 413.637 kb on + strand, within Pf6N2E2_347at 413.637 kb on + strand, within Pf6N2E2_347at 413.637 kb on + strand, within Pf6N2E2_347at 413.638 kb on - strand, within Pf6N2E2_347at 413.638 kb on - strand, within Pf6N2E2_347at 413.638 kb on - strand, within Pf6N2E2_347at 413.638 kb on - strand, within Pf6N2E2_347at 413.697 kb on + strand, within Pf6N2E2_347

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Per-strain Table

Position Strand Gene LocusTag Fraction bismuth(III) chloride 0.000025 M
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410,630 + Pf6N2E2_343 0.18 -0.8
410,630 + Pf6N2E2_343 0.18 +0.3
410,630 + Pf6N2E2_343 0.18 +0.4
410,630 + Pf6N2E2_343 0.18 -1.1
410,630 + Pf6N2E2_343 0.18 -0.3
410,630 + Pf6N2E2_343 0.18 -0.3
410,631 - Pf6N2E2_343 0.19 +0.3
410,631 - Pf6N2E2_343 0.19 +0.1
410,631 - Pf6N2E2_343 0.19 -0.8
410,631 - Pf6N2E2_343 0.19 +0.3
410,631 - Pf6N2E2_343 0.19 +0.4
410,631 - Pf6N2E2_343 0.19 -0.1
410,631 - Pf6N2E2_343 0.19 +0.8
410,734 - Pf6N2E2_343 0.33 -0.2
410,745 + Pf6N2E2_343 0.34 +0.5
410,745 + Pf6N2E2_343 0.34 +0.1
410,745 + Pf6N2E2_343 0.34 +0.1
410,745 + Pf6N2E2_343 0.34 -0.3
410,746 - Pf6N2E2_343 0.34 -0.1
410,746 - Pf6N2E2_343 0.34 +0.2
410,746 - Pf6N2E2_343 0.34 +0.6
410,858 - Pf6N2E2_343 0.50 +0.0
411,104 + Pf6N2E2_343 0.83 +1.2
411,105 - +2.7
411,105 - Pf6N2E2_343 0.83 -1.2
411,105 - Pf6N2E2_343 0.83 +0.2
411,107 + Pf6N2E2_343 0.84 -0.6
411,340 - Pf6N2E2_344 0.48 +0.5
411,340 - Pf6N2E2_344 0.48 +0.4
411,351 + Pf6N2E2_344 0.53 -0.0
411,352 - Pf6N2E2_344 0.54 -0.4
411,352 - Pf6N2E2_344 0.54 +0.5
411,483 + +0.4
411,484 - +0.0
411,518 + +0.4
411,518 + -0.2
411,762 + Pf6N2E2_345 0.12 -0.3
411,810 + Pf6N2E2_345 0.15 -0.3
411,810 + Pf6N2E2_345 0.15 -0.6
411,879 + Pf6N2E2_345 0.21 +0.6
411,879 + Pf6N2E2_345 0.21 -0.4
411,879 + Pf6N2E2_345 0.21 -0.8
411,880 - Pf6N2E2_345 0.21 -0.9
411,921 + Pf6N2E2_345 0.24 +0.2
411,921 + Pf6N2E2_345 0.24 -0.2
411,921 + Pf6N2E2_345 0.24 -1.4
411,954 + Pf6N2E2_345 0.26 -1.1
411,954 + Pf6N2E2_345 0.26 +0.4
411,954 + Pf6N2E2_345 0.26 -0.1
411,954 + Pf6N2E2_345 0.26 -0.1
411,954 + Pf6N2E2_345 0.26 -0.1
411,955 - Pf6N2E2_345 0.27 +1.0
411,955 - Pf6N2E2_345 0.27 -0.3
411,955 - Pf6N2E2_345 0.27 -1.5
411,955 - Pf6N2E2_345 0.27 +0.4
412,065 - Pf6N2E2_345 0.35 +0.7
412,068 + Pf6N2E2_345 0.35 +0.1
412,068 + Pf6N2E2_345 0.35 -1.0
412,068 + Pf6N2E2_345 0.35 -0.6
412,284 + Pf6N2E2_345 0.52 +0.1
412,284 + Pf6N2E2_345 0.52 +0.1
412,328 + Pf6N2E2_345 0.55 +0.3
412,329 - Pf6N2E2_345 0.55 -0.3
412,491 + Pf6N2E2_345 0.68 -0.2
412,492 - Pf6N2E2_345 0.68 -0.0
412,502 + Pf6N2E2_345 0.69 +0.4
412,503 - Pf6N2E2_345 0.69 -1.1
412,588 + Pf6N2E2_345 0.75 +0.9
412,815 + +0.1
412,945 - +1.4
412,989 - -0.2
413,010 + -0.1
413,219 + Pf6N2E2_346 0.50 -0.1
413,636 - Pf6N2E2_347 0.14 -2.5
413,637 + Pf6N2E2_347 0.14 +0.4
413,637 + Pf6N2E2_347 0.14 -0.0
413,637 + Pf6N2E2_347 0.14 -0.3
413,638 - Pf6N2E2_347 0.14 +0.1
413,638 - Pf6N2E2_347 0.14 -0.5
413,638 - Pf6N2E2_347 0.14 -0.4
413,638 - Pf6N2E2_347 0.14 +0.3
413,697 + Pf6N2E2_347 0.29 +0.5

Or see this region's nucleotide sequence