Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2110

Experiment: bismuth(III) chloride 0.000025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2109 and Pf6N2E2_2110 are separated by 29 nucleotidesPf6N2E2_2110 and Pf6N2E2_2111 are separated by 168 nucleotidesPf6N2E2_2111 and Pf6N2E2_2112 are separated by 35 nucleotides Pf6N2E2_2109 - NAD-dependent protein deacetylase of SIR2 family, at 2,506,171 to 2,507,010 _2109 Pf6N2E2_2110 - LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase, at 2,507,040 to 2,507,942 _2110 Pf6N2E2_2111 - Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data), at 2,508,111 to 2,508,809 _2111 Pf6N2E2_2112 - Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data), at 2,508,845 to 2,509,510 _2112 Position (kb) 2507 2508Strain fitness (log2 ratio) -2 -1 0 1 2at 2506.046 kb on + strandat 2506.046 kb on + strandat 2506.046 kb on + strandat 2506.046 kb on + strandat 2506.046 kb on + strandat 2506.046 kb on + strandat 2506.046 kb on + strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.047 kb on - strandat 2506.216 kb on + strandat 2506.216 kb on + strandat 2506.216 kb on + strandat 2506.216 kb on + strandat 2506.216 kb on + strandat 2506.216 kb on + strandat 2506.216 kb on + strandat 2506.217 kb on - strandat 2506.217 kb on - strandat 2506.217 kb on - strandat 2506.217 kb on - strandat 2506.217 kb on - strandat 2506.217 kb on - strandat 2506.330 kb on + strand, within Pf6N2E2_2109at 2506.330 kb on + strand, within Pf6N2E2_2109at 2506.330 kb on + strand, within Pf6N2E2_2109at 2506.331 kb on - strand, within Pf6N2E2_2109at 2506.331 kb on - strand, within Pf6N2E2_2109at 2506.331 kb on - strand, within Pf6N2E2_2109at 2506.855 kb on + strand, within Pf6N2E2_2109at 2506.856 kb on - strand, within Pf6N2E2_2109at 2506.856 kb on - strand, within Pf6N2E2_2109at 2507.008 kb on + strandat 2507.008 kb on + strandat 2507.009 kb on - strandat 2507.009 kb on - strandat 2507.461 kb on + strand, within Pf6N2E2_2110at 2507.461 kb on + strand, within Pf6N2E2_2110at 2507.462 kb on - strand, within Pf6N2E2_2110at 2507.462 kb on - strand, within Pf6N2E2_2110at 2507.462 kb on - strand, within Pf6N2E2_2110at 2507.792 kb on + strand, within Pf6N2E2_2110at 2507.792 kb on + strand, within Pf6N2E2_2110at 2507.793 kb on - strand, within Pf6N2E2_2110at 2507.972 kb on + strandat 2507.973 kb on - strandat 2508.097 kb on + strandat 2508.097 kb on + strandat 2508.098 kb on - strandat 2508.098 kb on - strandat 2508.142 kb on - strandat 2508.307 kb on + strand, within Pf6N2E2_2111at 2508.308 kb on - strand, within Pf6N2E2_2111at 2508.348 kb on + strand, within Pf6N2E2_2111at 2508.348 kb on + strandat 2508.348 kb on + strand, within Pf6N2E2_2111at 2508.349 kb on - strand, within Pf6N2E2_2111at 2508.349 kb on - strand, within Pf6N2E2_2111at 2508.349 kb on - strand, within Pf6N2E2_2111at 2508.744 kb on + strandat 2508.745 kb on - strandat 2508.839 kb on - strandat 2508.839 kb on - strandat 2508.902 kb on + strandat 2508.903 kb on - strandat 2508.903 kb on - strandat 2508.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction bismuth(III) chloride 0.000025 M
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2,506,046 + -0.5
2,506,046 + +1.5
2,506,046 + -0.3
2,506,046 + -1.6
2,506,046 + +0.7
2,506,046 + -0.3
2,506,046 + -0.1
2,506,047 - -0.5
2,506,047 - +0.6
2,506,047 - +0.8
2,506,047 - +0.3
2,506,047 - +0.7
2,506,047 - -1.1
2,506,047 - -0.2
2,506,047 - +1.4
2,506,047 - +0.9
2,506,047 - +0.1
2,506,047 - -0.4
2,506,047 - -0.7
2,506,047 - +0.7
2,506,047 - +1.9
2,506,047 - +0.4
2,506,216 + +2.0
2,506,216 + -0.3
2,506,216 + +1.2
2,506,216 + +0.7
2,506,216 + +0.9
2,506,216 + +0.7
2,506,216 + -0.3
2,506,217 - +0.8
2,506,217 - +0.5
2,506,217 - -0.7
2,506,217 - -2.6
2,506,217 - -0.4
2,506,217 - -0.3
2,506,330 + Pf6N2E2_2109 0.19 -0.1
2,506,330 + Pf6N2E2_2109 0.19 -0.1
2,506,330 + Pf6N2E2_2109 0.19 -0.3
2,506,331 - Pf6N2E2_2109 0.19 +1.0
2,506,331 - Pf6N2E2_2109 0.19 +0.4
2,506,331 - Pf6N2E2_2109 0.19 -0.3
2,506,855 + Pf6N2E2_2109 0.81 -0.3
2,506,856 - Pf6N2E2_2109 0.82 -0.6
2,506,856 - Pf6N2E2_2109 0.82 -0.2
2,507,008 + +0.3
2,507,008 + -0.1
2,507,009 - -1.6
2,507,009 - +0.2
2,507,461 + Pf6N2E2_2110 0.47 +0.2
2,507,461 + Pf6N2E2_2110 0.47 -1.2
2,507,462 - Pf6N2E2_2110 0.47 -0.2
2,507,462 - Pf6N2E2_2110 0.47 -1.5
2,507,462 - Pf6N2E2_2110 0.47 -1.5
2,507,792 + Pf6N2E2_2110 0.83 -0.3
2,507,792 + Pf6N2E2_2110 0.83 -0.5
2,507,793 - Pf6N2E2_2110 0.83 -0.4
2,507,972 + +0.1
2,507,973 - -0.1
2,508,097 + +0.8
2,508,097 + -0.1
2,508,098 - -0.6
2,508,098 - -1.2
2,508,142 - -1.1
2,508,307 + Pf6N2E2_2111 0.28 +0.4
2,508,308 - Pf6N2E2_2111 0.28 -1.7
2,508,348 + Pf6N2E2_2111 0.34 -0.1
2,508,348 + +2.7
2,508,348 + Pf6N2E2_2111 0.34 +0.1
2,508,349 - Pf6N2E2_2111 0.34 -1.3
2,508,349 - Pf6N2E2_2111 0.34 +0.1
2,508,349 - Pf6N2E2_2111 0.34 +0.4
2,508,744 + +0.6
2,508,745 - +0.6
2,508,839 - +0.4
2,508,839 - -0.8
2,508,902 + -1.4
2,508,903 - -1.0
2,508,903 - -0.2
2,508,905 + -0.1

Or see this region's nucleotide sequence