Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1176

Experiment: bismuth(III) chloride 0.000025 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1175 and Pf6N2E2_1176 are separated by 73 nucleotidesPf6N2E2_1176 and Pf6N2E2_1177 are separated by 12 nucleotides Pf6N2E2_1175 - VgrG protein, at 1,375,292 to 1,377,517 _1175 Pf6N2E2_1176 - Mll2356 protein, at 1,377,591 to 1,377,986 _1176 Pf6N2E2_1177 - putative exported protein, at 1,377,999 to 1,379,141 _1177 Position (kb) 1377 1378Strain fitness (log2 ratio) -1 0 1 2at 1377.197 kb on - strand, within Pf6N2E2_1175at 1377.395 kb on - strandat 1377.395 kb on - strandat 1377.515 kb on + strandat 1377.515 kb on + strandat 1377.534 kb on - strandat 1377.546 kb on + strandat 1377.683 kb on + strand, within Pf6N2E2_1176at 1377.907 kb on + strand, within Pf6N2E2_1176at 1377.907 kb on + strand, within Pf6N2E2_1176at 1377.908 kb on - strand, within Pf6N2E2_1176at 1377.908 kb on - strand, within Pf6N2E2_1176at 1377.908 kb on - strand, within Pf6N2E2_1176at 1377.908 kb on - strand, within Pf6N2E2_1176at 1377.973 kb on + strandat 1378.037 kb on + strandat 1378.037 kb on + strandat 1378.038 kb on - strandat 1378.096 kb on - strandat 1378.169 kb on - strand, within Pf6N2E2_1177at 1378.204 kb on - strand, within Pf6N2E2_1177at 1378.356 kb on + strand, within Pf6N2E2_1177at 1378.356 kb on + strand, within Pf6N2E2_1177at 1378.602 kb on + strand, within Pf6N2E2_1177at 1378.602 kb on + strand, within Pf6N2E2_1177at 1378.602 kb on + strand, within Pf6N2E2_1177at 1378.602 kb on + strand, within Pf6N2E2_1177at 1378.603 kb on - strand, within Pf6N2E2_1177at 1378.603 kb on - strand, within Pf6N2E2_1177at 1378.603 kb on - strand, within Pf6N2E2_1177at 1378.649 kb on + strand, within Pf6N2E2_1177at 1378.650 kb on - strand, within Pf6N2E2_1177at 1378.668 kb on + strand, within Pf6N2E2_1177at 1378.668 kb on + strand, within Pf6N2E2_1177at 1378.669 kb on - strand, within Pf6N2E2_1177

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Per-strain Table

Position Strand Gene LocusTag Fraction bismuth(III) chloride 0.000025 M
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1,377,197 - Pf6N2E2_1175 0.86 +1.0
1,377,395 - -0.2
1,377,395 - +0.0
1,377,515 + +0.9
1,377,515 + -0.1
1,377,534 - +2.0
1,377,546 + +0.2
1,377,683 + Pf6N2E2_1176 0.23 -0.2
1,377,907 + Pf6N2E2_1176 0.80 -1.1
1,377,907 + Pf6N2E2_1176 0.80 +1.3
1,377,908 - Pf6N2E2_1176 0.80 -1.6
1,377,908 - Pf6N2E2_1176 0.80 +0.3
1,377,908 - Pf6N2E2_1176 0.80 -1.0
1,377,908 - Pf6N2E2_1176 0.80 -0.2
1,377,973 + +0.3
1,378,037 + -0.2
1,378,037 + -0.1
1,378,038 - +0.3
1,378,096 - +0.6
1,378,169 - Pf6N2E2_1177 0.15 -0.9
1,378,204 - Pf6N2E2_1177 0.18 +1.5
1,378,356 + Pf6N2E2_1177 0.31 -0.7
1,378,356 + Pf6N2E2_1177 0.31 -1.0
1,378,602 + Pf6N2E2_1177 0.53 +0.0
1,378,602 + Pf6N2E2_1177 0.53 +0.2
1,378,602 + Pf6N2E2_1177 0.53 +0.6
1,378,602 + Pf6N2E2_1177 0.53 +0.3
1,378,603 - Pf6N2E2_1177 0.53 -1.4
1,378,603 - Pf6N2E2_1177 0.53 -0.2
1,378,603 - Pf6N2E2_1177 0.53 -1.7
1,378,649 + Pf6N2E2_1177 0.57 +0.8
1,378,650 - Pf6N2E2_1177 0.57 +0.7
1,378,668 + Pf6N2E2_1177 0.59 +0.3
1,378,668 + Pf6N2E2_1177 0.59 -0.4
1,378,669 - Pf6N2E2_1177 0.59 -0.9

Or see this region's nucleotide sequence