Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06524

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06523 and H281DRAFT_06524 overlap by 4 nucleotidesH281DRAFT_06524 and H281DRAFT_06525 are separated by 6 nucleotides H281DRAFT_06522: H281DRAFT_06522 - hypothetical protein, at 1,983 to 2,420 _06522 H281DRAFT_06523: H281DRAFT_06523 - protoporphyrin IX magnesium-chelatase (EC 6.6.1.1), at 2,228 to 3,310 _06523 H281DRAFT_06524: H281DRAFT_06524 - cobaltochelatase CobN subunit, at 3,307 to 7,122 _06524 H281DRAFT_06525: H281DRAFT_06525 - cobalamin biosynthesis protein CobW, at 7,129 to 8,310 _06525 Position (kb) 3 4 5 6 7 8Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2.344 kb on + strandat 2.410 kb on + strandat 2.564 kb on - strand, within H281DRAFT_06523at 2.649 kb on + strand, within H281DRAFT_06523at 2.703 kb on + strand, within H281DRAFT_06523at 2.857 kb on + strand, within H281DRAFT_06523at 2.857 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.959 kb on - strand, within H281DRAFT_06523at 2.959 kb on - strand, within H281DRAFT_06523at 3.491 kb on + strandat 3.491 kb on + strandat 3.492 kb on - strandat 3.548 kb on + strandat 3.554 kb on + strandat 3.555 kb on - strandat 3.560 kb on + strandat 3.594 kb on + strandat 3.596 kb on + strandat 3.597 kb on - strandat 3.611 kb on - strandat 3.720 kb on - strand, within H281DRAFT_06524at 3.786 kb on - strand, within H281DRAFT_06524at 3.835 kb on + strand, within H281DRAFT_06524at 3.835 kb on + strand, within H281DRAFT_06524at 3.905 kb on + strand, within H281DRAFT_06524at 3.906 kb on - strand, within H281DRAFT_06524at 3.906 kb on - strand, within H281DRAFT_06524at 3.929 kb on + strand, within H281DRAFT_06524at 3.930 kb on - strand, within H281DRAFT_06524at 4.387 kb on + strand, within H281DRAFT_06524at 4.713 kb on + strand, within H281DRAFT_06524at 4.713 kb on + strand, within H281DRAFT_06524at 4.714 kb on - strand, within H281DRAFT_06524at 4.719 kb on + strand, within H281DRAFT_06524at 5.092 kb on + strand, within H281DRAFT_06524at 5.151 kb on + strand, within H281DRAFT_06524at 5.152 kb on - strand, within H281DRAFT_06524at 5.152 kb on - strand, within H281DRAFT_06524at 5.152 kb on - strand, within H281DRAFT_06524at 5.163 kb on + strand, within H281DRAFT_06524at 5.185 kb on + strand, within H281DRAFT_06524at 5.225 kb on + strand, within H281DRAFT_06524at 5.226 kb on - strand, within H281DRAFT_06524at 5.226 kb on - strand, within H281DRAFT_06524at 5.228 kb on + strand, within H281DRAFT_06524at 5.385 kb on + strand, within H281DRAFT_06524at 5.416 kb on - strand, within H281DRAFT_06524at 5.416 kb on - strand, within H281DRAFT_06524at 5.516 kb on + strand, within H281DRAFT_06524at 5.517 kb on - strand, within H281DRAFT_06524at 5.528 kb on + strand, within H281DRAFT_06524at 5.562 kb on - strand, within H281DRAFT_06524at 5.615 kb on - strand, within H281DRAFT_06524at 5.745 kb on - strand, within H281DRAFT_06524at 5.745 kb on - strand, within H281DRAFT_06524at 5.831 kb on - strand, within H281DRAFT_06524at 5.961 kb on - strand, within H281DRAFT_06524at 6.171 kb on + strand, within H281DRAFT_06524at 6.196 kb on - strand, within H281DRAFT_06524at 6.368 kb on - strand, within H281DRAFT_06524at 6.368 kb on - strand, within H281DRAFT_06524at 6.403 kb on - strand, within H281DRAFT_06524at 6.845 kb on + strandat 6.846 kb on - strandat 6.943 kb on + strandat 6.943 kb on + strandat 7.080 kb on + strandat 7.081 kb on - strandat 7.284 kb on - strand, within H281DRAFT_06525at 7.284 kb on - strand, within H281DRAFT_06525at 7.405 kb on + strand, within H281DRAFT_06525at 7.548 kb on + strand, within H281DRAFT_06525at 8.015 kb on + strand, within H281DRAFT_06525at 8.070 kb on + strand, within H281DRAFT_06525

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,344 + +0.1
2,410 + -1.0
2,564 - H281DRAFT_06523 0.31 -0.3
2,649 + H281DRAFT_06523 0.39 -0.8
2,703 + H281DRAFT_06523 0.44 -3.1
2,857 + H281DRAFT_06523 0.58 +1.2
2,857 + H281DRAFT_06523 0.58 -0.7
2,958 + H281DRAFT_06523 0.67 -1.6
2,958 + H281DRAFT_06523 0.67 -1.0
2,958 + H281DRAFT_06523 0.67 -2.5
2,958 + H281DRAFT_06523 0.67 -1.9
2,959 - H281DRAFT_06523 0.67 -3.1
2,959 - H281DRAFT_06523 0.67 -0.6
3,491 + -1.5
3,491 + -2.9
3,492 - -3.2
3,548 + -3.3
3,554 + -1.3
3,555 - -2.4
3,560 + +0.1
3,594 + -0.8
3,596 + -1.5
3,597 - -0.8
3,611 - -2.5
3,720 - H281DRAFT_06524 0.11 -1.1
3,786 - H281DRAFT_06524 0.13 +0.6
3,835 + H281DRAFT_06524 0.14 -0.4
3,835 + H281DRAFT_06524 0.14 -2.4
3,905 + H281DRAFT_06524 0.16 -1.5
3,906 - H281DRAFT_06524 0.16 -1.2
3,906 - H281DRAFT_06524 0.16 -3.1
3,929 + H281DRAFT_06524 0.16 -4.2
3,930 - H281DRAFT_06524 0.16 -2.1
4,387 + H281DRAFT_06524 0.28 -1.5
4,713 + H281DRAFT_06524 0.37 -0.6
4,713 + H281DRAFT_06524 0.37 -2.4
4,714 - H281DRAFT_06524 0.37 -1.6
4,719 + H281DRAFT_06524 0.37 -3.1
5,092 + H281DRAFT_06524 0.47 -1.0
5,151 + H281DRAFT_06524 0.48 -1.5
5,152 - H281DRAFT_06524 0.48 -1.1
5,152 - H281DRAFT_06524 0.48 -0.4
5,152 - H281DRAFT_06524 0.48 -2.7
5,163 + H281DRAFT_06524 0.49 -1.6
5,185 + H281DRAFT_06524 0.49 +0.3
5,225 + H281DRAFT_06524 0.50 -2.8
5,226 - H281DRAFT_06524 0.50 -0.3
5,226 - H281DRAFT_06524 0.50 -1.8
5,228 + H281DRAFT_06524 0.50 -0.6
5,385 + H281DRAFT_06524 0.54 +0.3
5,416 - H281DRAFT_06524 0.55 -0.9
5,416 - H281DRAFT_06524 0.55 -1.8
5,516 + H281DRAFT_06524 0.58 -2.6
5,517 - H281DRAFT_06524 0.58 -2.2
5,528 + H281DRAFT_06524 0.58 -3.2
5,562 - H281DRAFT_06524 0.59 -3.4
5,615 - H281DRAFT_06524 0.60 -1.7
5,745 - H281DRAFT_06524 0.64 +2.2
5,745 - H281DRAFT_06524 0.64 -0.9
5,831 - H281DRAFT_06524 0.66 -1.8
5,961 - H281DRAFT_06524 0.70 +0.3
6,171 + H281DRAFT_06524 0.75 +0.4
6,196 - H281DRAFT_06524 0.76 -0.2
6,368 - H281DRAFT_06524 0.80 -1.5
6,368 - H281DRAFT_06524 0.80 -2.3
6,403 - H281DRAFT_06524 0.81 -1.2
6,845 + -1.8
6,846 - -1.1
6,943 + -1.4
6,943 + -0.9
7,080 + -2.2
7,081 - -0.8
7,284 - H281DRAFT_06525 0.13 -0.2
7,284 - H281DRAFT_06525 0.13 -0.7
7,405 + H281DRAFT_06525 0.23 -3.6
7,548 + H281DRAFT_06525 0.35 -0.8
8,015 + H281DRAFT_06525 0.75 -0.2
8,070 + H281DRAFT_06525 0.80 -1.1

Or see this region's nucleotide sequence