Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06005

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06003 and H281DRAFT_06004 are separated by 84 nucleotidesH281DRAFT_06004 and H281DRAFT_06005 are separated by 440 nucleotidesH281DRAFT_06005 and H281DRAFT_06006 are separated by 279 nucleotidesH281DRAFT_06006 and H281DRAFT_06007 are separated by 105 nucleotides H281DRAFT_06003: H281DRAFT_06003 - Pimeloyl-ACP methyl ester carboxylesterase, at 4,408 to 5,202 _06003 H281DRAFT_06004: H281DRAFT_06004 - protein of unknown function (DUF4148), at 5,287 to 5,637 _06004 H281DRAFT_06005: H281DRAFT_06005 - methyltransferase, FkbM family, at 6,078 to 6,788 _06005 H281DRAFT_06006: H281DRAFT_06006 - MEKHLA domain-containing protein, at 7,068 to 7,523 _06006 H281DRAFT_06007: H281DRAFT_06007 - amino acid ABC transporter substrate-binding protein, PAAT family, at 7,629 to 8,360 _06007 Position (kb) 6 7Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5.317 kb on - strandat 6.079 kb on + strandat 6.079 kb on + strandat 6.108 kb on - strandat 6.112 kb on - strandat 6.152 kb on + strand, within H281DRAFT_06005at 6.173 kb on - strand, within H281DRAFT_06005at 6.212 kb on + strand, within H281DRAFT_06005at 6.247 kb on + strand, within H281DRAFT_06005at 6.389 kb on + strand, within H281DRAFT_06005at 6.390 kb on - strand, within H281DRAFT_06005at 6.390 kb on - strand, within H281DRAFT_06005at 6.446 kb on - strand, within H281DRAFT_06005at 6.446 kb on - strand, within H281DRAFT_06005at 6.461 kb on - strand, within H281DRAFT_06005at 6.590 kb on - strand, within H281DRAFT_06005at 6.599 kb on - strand, within H281DRAFT_06005at 6.599 kb on - strand, within H281DRAFT_06005at 6.602 kb on + strand, within H281DRAFT_06005at 6.602 kb on + strand, within H281DRAFT_06005at 6.644 kb on - strand, within H281DRAFT_06005at 6.644 kb on - strand, within H281DRAFT_06005at 6.673 kb on - strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.713 kb on - strand, within H281DRAFT_06005at 6.713 kb on - strand, within H281DRAFT_06005at 6.776 kb on + strandat 6.829 kb on + strandat 6.859 kb on + strandat 6.859 kb on + strandat 6.927 kb on + strandat 7.036 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.345 kb on + strand, within H281DRAFT_06006at 7.346 kb on - strand, within H281DRAFT_06006at 7.346 kb on - strand, within H281DRAFT_06006at 7.436 kb on + strand, within H281DRAFT_06006at 7.437 kb on - strand, within H281DRAFT_06006at 7.457 kb on + strand, within H281DRAFT_06006at 7.474 kb on + strand, within H281DRAFT_06006at 7.478 kb on + strandat 7.478 kb on + strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.528 kb on + strandat 7.529 kb on - strandat 7.627 kb on + strandat 7.628 kb on - strandat 7.714 kb on + strand, within H281DRAFT_06007at 7.714 kb on + strand, within H281DRAFT_06007

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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5,317 - +0.7
6,079 + -0.7
6,079 + -0.5
6,108 - +0.1
6,112 - -2.4
6,152 + H281DRAFT_06005 0.10 +0.5
6,173 - H281DRAFT_06005 0.13 -0.3
6,212 + H281DRAFT_06005 0.19 +0.2
6,247 + H281DRAFT_06005 0.24 +1.0
6,389 + H281DRAFT_06005 0.44 -0.7
6,390 - H281DRAFT_06005 0.44 +0.5
6,390 - H281DRAFT_06005 0.44 +0.1
6,446 - H281DRAFT_06005 0.52 -0.8
6,446 - H281DRAFT_06005 0.52 +0.7
6,461 - H281DRAFT_06005 0.54 -0.1
6,590 - H281DRAFT_06005 0.72 +0.1
6,599 - H281DRAFT_06005 0.73 +0.3
6,599 - H281DRAFT_06005 0.73 +0.4
6,602 + H281DRAFT_06005 0.74 +0.6
6,602 + H281DRAFT_06005 0.74 -0.1
6,644 - H281DRAFT_06005 0.80 -0.3
6,644 - H281DRAFT_06005 0.80 +0.0
6,673 - H281DRAFT_06005 0.84 -0.7
6,712 + H281DRAFT_06005 0.89 +0.5
6,712 + H281DRAFT_06005 0.89 -0.1
6,712 + H281DRAFT_06005 0.89 +1.0
6,713 - H281DRAFT_06005 0.89 -0.4
6,713 - H281DRAFT_06005 0.89 -0.0
6,776 + +0.4
6,829 + +0.0
6,859 + -1.7
6,859 + +0.3
6,927 + -0.3
7,036 + -2.1
7,060 + +3.3
7,060 + -0.5
7,060 + -0.0
7,060 + +0.3
7,345 + H281DRAFT_06006 0.61 -0.5
7,346 - H281DRAFT_06006 0.61 +0.1
7,346 - H281DRAFT_06006 0.61 +0.4
7,436 + H281DRAFT_06006 0.81 +0.1
7,437 - H281DRAFT_06006 0.81 -0.9
7,457 + H281DRAFT_06006 0.85 -1.2
7,474 + H281DRAFT_06006 0.89 -0.6
7,478 + +0.1
7,478 + +0.7
7,479 - +0.2
7,479 - +0.4
7,479 - +0.5
7,479 - -0.1
7,528 + +0.4
7,529 - +0.3
7,627 + +0.8
7,628 - +0.7
7,714 + H281DRAFT_06007 0.12 +0.1
7,714 + H281DRAFT_06007 0.12 +0.0

Or see this region's nucleotide sequence