Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05943

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05942 and H281DRAFT_05943 are separated by 161 nucleotidesH281DRAFT_05943 and H281DRAFT_05944 are separated by 79 nucleotides H281DRAFT_05942: H281DRAFT_05942 - transcriptional regulator, LysR family, at 81,711 to 82,562 _05942 H281DRAFT_05943: H281DRAFT_05943 - Permease of the drug/metabolite transporter (DMT) superfamily, at 82,724 to 83,593 _05943 H281DRAFT_05944: H281DRAFT_05944 - DNA-binding transcriptional regulator, FadR family, at 83,673 to 84,374 _05944 Position (kb) 82 83 84Strain fitness (log2 ratio) -1 0 1at 82.043 kb on - strand, within H281DRAFT_05942at 82.043 kb on - strand, within H281DRAFT_05942at 82.084 kb on - strand, within H281DRAFT_05942at 82.232 kb on + strand, within H281DRAFT_05942at 82.233 kb on - strand, within H281DRAFT_05942at 82.255 kb on + strand, within H281DRAFT_05942at 82.786 kb on - strandat 83.004 kb on + strand, within H281DRAFT_05943at 83.274 kb on + strand, within H281DRAFT_05943at 83.846 kb on + strand, within H281DRAFT_05944at 84.281 kb on - strand, within H281DRAFT_05944at 84.285 kb on - strand, within H281DRAFT_05944at 84.329 kb on - strandat 84.432 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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82,043 - H281DRAFT_05942 0.39 -0.4
82,043 - H281DRAFT_05942 0.39 +0.3
82,084 - H281DRAFT_05942 0.44 -0.4
82,232 + H281DRAFT_05942 0.61 +0.4
82,233 - H281DRAFT_05942 0.61 -0.6
82,255 + H281DRAFT_05942 0.64 -0.9
82,786 - +0.7
83,004 + H281DRAFT_05943 0.32 +0.0
83,274 + H281DRAFT_05943 0.63 +1.3
83,846 + H281DRAFT_05944 0.25 -0.0
84,281 - H281DRAFT_05944 0.87 -0.1
84,285 - H281DRAFT_05944 0.87 -0.1
84,329 - +0.0
84,432 - +0.6

Or see this region's nucleotide sequence