Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05816 and H281DRAFT_05817 are separated by 81 nucleotides H281DRAFT_05817 and H281DRAFT_05818 are separated by 32 nucleotides H281DRAFT_05818 and H281DRAFT_05819 overlap by 4 nucleotides
H281DRAFT_05816: H281DRAFT_05816 - soluble lytic murein transglycosylase, at 92,275 to 94,203
_05816
H281DRAFT_05817: H281DRAFT_05817 - NADH dehydrogenase, at 94,285 to 95,238
_05817
H281DRAFT_05818: H281DRAFT_05818 - glutathione S-transferase, at 95,271 to 95,924
_05818
H281DRAFT_05819: H281DRAFT_05819 - tRNA nucleotidyltransferase (CCA-adding enzyme), at 95,921 to 97,153
_05819
Position (kb) 94
95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 93.313 kb on + strand, within H281DRAFT_05816 at 93.401 kb on - strand, within H281DRAFT_05816 at 93.450 kb on + strand, within H281DRAFT_05816 at 93.451 kb on - strand, within H281DRAFT_05816 at 93.523 kb on + strand, within H281DRAFT_05816 at 93.524 kb on - strand, within H281DRAFT_05816 at 93.524 kb on - strand, within H281DRAFT_05816 at 93.613 kb on + strand, within H281DRAFT_05816 at 93.634 kb on + strand, within H281DRAFT_05816 at 93.634 kb on + strand, within H281DRAFT_05816 at 93.634 kb on + strand, within H281DRAFT_05816 at 93.635 kb on - strand, within H281DRAFT_05816 at 93.635 kb on - strand, within H281DRAFT_05816 at 93.635 kb on - strand, within H281DRAFT_05816 at 93.695 kb on - strand, within H281DRAFT_05816 at 93.695 kb on - strand, within H281DRAFT_05816 at 93.764 kb on - strand, within H281DRAFT_05816 at 93.943 kb on + strand, within H281DRAFT_05816 at 93.943 kb on + strand, within H281DRAFT_05816 at 93.944 kb on - strand, within H281DRAFT_05816 at 93.958 kb on + strand, within H281DRAFT_05816 at 93.958 kb on + strand, within H281DRAFT_05816 at 93.958 kb on + strand, within H281DRAFT_05816 at 93.959 kb on - strand, within H281DRAFT_05816 at 94.000 kb on + strand, within H281DRAFT_05816 at 94.105 kb on + strand at 94.105 kb on + strand at 94.106 kb on - strand at 94.135 kb on + strand at 94.135 kb on + strand at 94.139 kb on - strand at 94.189 kb on + strand at 94.189 kb on + strand at 94.396 kb on + strand, within H281DRAFT_05817 at 94.396 kb on + strand, within H281DRAFT_05817 at 94.397 kb on - strand at 94.397 kb on - strand, within H281DRAFT_05817 at 94.398 kb on + strand, within H281DRAFT_05817 at 94.398 kb on + strand, within H281DRAFT_05817 at 94.425 kb on + strand, within H281DRAFT_05817 at 94.500 kb on + strand, within H281DRAFT_05817 at 94.849 kb on + strand, within H281DRAFT_05817 at 94.850 kb on - strand, within H281DRAFT_05817 at 94.940 kb on - strand, within H281DRAFT_05817 at 94.964 kb on - strand, within H281DRAFT_05817 at 95.260 kb on + strand at 95.260 kb on + strand at 95.260 kb on + strand at 95.261 kb on - strand at 95.261 kb on - strand at 95.282 kb on + strand at 95.282 kb on + strand at 95.282 kb on + strand at 95.282 kb on + strand at 95.282 kb on + strand at 95.298 kb on + strand at 95.609 kb on + strand, within H281DRAFT_05818 at 95.715 kb on + strand, within H281DRAFT_05818 at 95.715 kb on + strand, within H281DRAFT_05818 at 95.715 kb on + strand, within H281DRAFT_05818 at 95.715 kb on + strand, within H281DRAFT_05818 at 95.715 kb on + strand, within H281DRAFT_05818 at 95.715 kb on + strand, within H281DRAFT_05818 at 95.716 kb on - strand, within H281DRAFT_05818 at 95.716 kb on - strand, within H281DRAFT_05818 at 95.763 kb on + strand, within H281DRAFT_05818 at 95.763 kb on + strand, within H281DRAFT_05818 at 95.764 kb on - strand, within H281DRAFT_05818 at 95.764 kb on - strand, within H281DRAFT_05818 at 95.826 kb on + strand, within H281DRAFT_05818 at 95.827 kb on - strand, within H281DRAFT_05818 at 95.828 kb on + strand, within H281DRAFT_05818 at 95.828 kb on + strand, within H281DRAFT_05818 at 95.904 kb on + strand at 95.905 kb on - strand at 95.908 kb on + strand at 95.908 kb on + strand at 95.926 kb on + strand at 95.926 kb on + strand at 95.930 kb on + strand at 95.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 93,313 + H281DRAFT_05816 0.54 -0.0 93,401 - H281DRAFT_05816 0.58 -0.2 93,450 + H281DRAFT_05816 0.61 +0.2 93,451 - H281DRAFT_05816 0.61 +0.1 93,523 + H281DRAFT_05816 0.65 +1.4 93,524 - H281DRAFT_05816 0.65 +0.6 93,524 - H281DRAFT_05816 0.65 -0.5 93,613 + H281DRAFT_05816 0.69 -0.6 93,634 + H281DRAFT_05816 0.70 -1.1 93,634 + H281DRAFT_05816 0.70 +0.0 93,634 + H281DRAFT_05816 0.70 -2.3 93,635 - H281DRAFT_05816 0.71 -0.4 93,635 - H281DRAFT_05816 0.71 +0.3 93,635 - H281DRAFT_05816 0.71 -0.4 93,695 - H281DRAFT_05816 0.74 +0.1 93,695 - H281DRAFT_05816 0.74 +0.1 93,764 - H281DRAFT_05816 0.77 +0.8 93,943 + H281DRAFT_05816 0.86 +0.2 93,943 + H281DRAFT_05816 0.86 -1.2 93,944 - H281DRAFT_05816 0.87 -0.3 93,958 + H281DRAFT_05816 0.87 +0.6 93,958 + H281DRAFT_05816 0.87 -0.0 93,958 + H281DRAFT_05816 0.87 -0.3 93,959 - H281DRAFT_05816 0.87 -1.0 94,000 + H281DRAFT_05816 0.89 -0.6 94,105 + -1.4 94,105 + -1.0 94,106 - -1.3 94,135 + +1.2 94,135 + -0.4 94,139 - -2.6 94,189 + +0.8 94,189 + +2.0 94,396 + H281DRAFT_05817 0.12 -0.0 94,396 + H281DRAFT_05817 0.12 +0.5 94,397 - -0.3 94,397 - H281DRAFT_05817 0.12 -2.9 94,398 + H281DRAFT_05817 0.12 -0.4 94,398 + H281DRAFT_05817 0.12 +0.0 94,425 + H281DRAFT_05817 0.15 +0.4 94,500 + H281DRAFT_05817 0.23 -0.3 94,849 + H281DRAFT_05817 0.59 +0.2 94,850 - H281DRAFT_05817 0.59 -0.9 94,940 - H281DRAFT_05817 0.69 -0.5 94,964 - H281DRAFT_05817 0.71 +0.1 95,260 + -2.5 95,260 + -0.7 95,260 + +0.4 95,261 - +0.1 95,261 - -0.8 95,282 + -0.0 95,282 + +0.5 95,282 + -0.1 95,282 + +0.7 95,282 + +0.8 95,298 + +0.8 95,609 + H281DRAFT_05818 0.52 -0.6 95,715 + H281DRAFT_05818 0.68 +0.1 95,715 + H281DRAFT_05818 0.68 -0.7 95,715 + H281DRAFT_05818 0.68 +0.6 95,715 + H281DRAFT_05818 0.68 +0.3 95,715 + H281DRAFT_05818 0.68 +1.0 95,715 + H281DRAFT_05818 0.68 -0.0 95,716 - H281DRAFT_05818 0.68 -1.4 95,716 - H281DRAFT_05818 0.68 -2.9 95,763 + H281DRAFT_05818 0.75 -0.1 95,763 + H281DRAFT_05818 0.75 +0.3 95,764 - H281DRAFT_05818 0.75 -3.1 95,764 - H281DRAFT_05818 0.75 -2.5 95,826 + H281DRAFT_05818 0.85 +0.7 95,827 - H281DRAFT_05818 0.85 -2.2 95,828 + H281DRAFT_05818 0.85 +1.2 95,828 + H281DRAFT_05818 0.85 +0.0 95,904 + -0.4 95,905 - -0.8 95,908 + +1.1 95,908 + +0.0 95,926 + -2.3 95,926 + -2.7 95,930 + +1.1 95,930 + +0.2
Or see this region's nucleotide sequence