Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05486

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05485 and H281DRAFT_05486 are separated by 541 nucleotides H281DRAFT_05485: H281DRAFT_05485 - Group II intron, maturase-specific domain, at 64,694 to 65,425 _05485 H281DRAFT_05486: H281DRAFT_05486 - hypothetical protein, at 65,967 to 66,368 _05486 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1at 65.225 kb on - strand, within H281DRAFT_05485at 65.225 kb on - strand, within H281DRAFT_05485at 65.229 kb on - strand, within H281DRAFT_05485at 65.296 kb on + strand, within H281DRAFT_05485at 65.420 kb on + strandat 65.509 kb on + strandat 65.609 kb on + strandat 65.609 kb on + strandat 65.679 kb on + strandat 65.824 kb on + strandat 65.836 kb on - strandat 65.919 kb on + strandat 65.924 kb on - strandat 65.924 kb on - strandat 65.968 kb on + strandat 65.969 kb on - strandat 66.022 kb on - strand, within H281DRAFT_05486at 66.027 kb on - strand, within H281DRAFT_05486at 66.294 kb on + strand, within H281DRAFT_05486at 66.294 kb on + strand, within H281DRAFT_05486at 66.499 kb on + strandat 66.499 kb on + strandat 66.499 kb on + strandat 66.500 kb on - strandat 66.526 kb on - strandat 66.526 kb on - strandat 66.531 kb on + strandat 66.532 kb on - strandat 66.659 kb on + strandat 66.895 kb on + strandat 66.900 kb on - strandat 66.900 kb on - strandat 67.028 kb on + strandat 67.092 kb on + strandat 67.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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65,225 - H281DRAFT_05485 0.73 +0.1
65,225 - H281DRAFT_05485 0.73 -0.7
65,229 - H281DRAFT_05485 0.73 -0.7
65,296 + H281DRAFT_05485 0.82 +1.0
65,420 + +0.6
65,509 + +1.3
65,609 + +0.1
65,609 + +0.3
65,679 + +0.1
65,824 + -0.3
65,836 - +0.8
65,919 + -0.5
65,924 - +0.1
65,924 - +0.9
65,968 + -1.8
65,969 - +0.1
66,022 - H281DRAFT_05486 0.14 -1.4
66,027 - H281DRAFT_05486 0.15 +0.6
66,294 + H281DRAFT_05486 0.81 -0.8
66,294 + H281DRAFT_05486 0.81 -0.9
66,499 + -0.2
66,499 + +0.7
66,499 + -0.1
66,500 - -2.7
66,526 - -0.8
66,526 - +0.3
66,531 + -0.0
66,532 - +1.4
66,659 + -1.3
66,895 + -2.6
66,900 - +0.1
66,900 - +0.7
67,028 + +0.2
67,092 + +0.8
67,093 - -1.0

Or see this region's nucleotide sequence