Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05313

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05312 and H281DRAFT_05313 are separated by 86 nucleotidesH281DRAFT_05313 and H281DRAFT_05314 are separated by 216 nucleotides H281DRAFT_05312: H281DRAFT_05312 - dihydroxyacid dehydratase, at 59,575 to 61,434 _05312 H281DRAFT_05313: H281DRAFT_05313 - Polygalacturonase, at 61,521 to 63,524 _05313 H281DRAFT_05314: H281DRAFT_05314 - 2-hydroxy-3-oxopropionate reductase, at 63,741 to 64,634 _05314 Position (kb) 61 62 63 64Strain fitness (log2 ratio) -1 0 1at 60.550 kb on + strand, within H281DRAFT_05312at 60.722 kb on - strand, within H281DRAFT_05312at 60.813 kb on + strand, within H281DRAFT_05312at 60.823 kb on + strand, within H281DRAFT_05312at 61.027 kb on + strand, within H281DRAFT_05312at 61.081 kb on + strand, within H281DRAFT_05312at 61.084 kb on - strand, within H281DRAFT_05312at 61.601 kb on - strandat 61.601 kb on - strandat 61.607 kb on - strandat 61.727 kb on - strand, within H281DRAFT_05313at 62.048 kb on - strand, within H281DRAFT_05313at 62.155 kb on + strand, within H281DRAFT_05313at 62.464 kb on + strand, within H281DRAFT_05313at 62.464 kb on + strandat 62.943 kb on + strand, within H281DRAFT_05313at 63.972 kb on - strand, within H281DRAFT_05314at 64.132 kb on - strand, within H281DRAFT_05314at 64.311 kb on + strand, within H281DRAFT_05314

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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60,550 + H281DRAFT_05312 0.52 +0.7
60,722 - H281DRAFT_05312 0.62 -0.3
60,813 + H281DRAFT_05312 0.67 +0.3
60,823 + H281DRAFT_05312 0.67 +0.4
61,027 + H281DRAFT_05312 0.78 +0.6
61,081 + H281DRAFT_05312 0.81 -0.4
61,084 - H281DRAFT_05312 0.81 +0.3
61,601 - -0.9
61,601 - -0.3
61,607 - -0.2
61,727 - H281DRAFT_05313 0.10 +0.6
62,048 - H281DRAFT_05313 0.26 +0.6
62,155 + H281DRAFT_05313 0.32 +0.0
62,464 + H281DRAFT_05313 0.47 +0.8
62,464 + +1.6
62,943 + H281DRAFT_05313 0.71 +0.8
63,972 - H281DRAFT_05314 0.26 +0.4
64,132 - H281DRAFT_05314 0.44 -1.4
64,311 + H281DRAFT_05314 0.64 +0.9

Or see this region's nucleotide sequence