Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05102

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05101 and H281DRAFT_05102 are separated by 485 nucleotidesH281DRAFT_05102 and H281DRAFT_05103 overlap by 4 nucleotides H281DRAFT_05101: H281DRAFT_05101 - ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-), at 44,042 to 45,937 _05101 H281DRAFT_05102: H281DRAFT_05102 - ribosome maturation factor RimP, at 46,423 to 46,881 _05102 H281DRAFT_05103: H281DRAFT_05103 - NusA antitermination factor, at 46,878 to 48,353 _05103 Position (kb) 46 47Strain fitness (log2 ratio) -1 0 1 2at 45.970 kb on + strandat 45.972 kb on + strandat 45.973 kb on - strandat 46.008 kb on - strandat 46.041 kb on + strandat 46.042 kb on - strandat 46.120 kb on - strandat 46.411 kb on + strandat 46.411 kb on + strandat 46.411 kb on + strandat 46.411 kb on + strandat 46.411 kb on + strandat 46.411 kb on + strandat 46.411 kb on + strandat 46.512 kb on + strand, within H281DRAFT_05102at 46.512 kb on + strand, within H281DRAFT_05102at 46.583 kb on + strand, within H281DRAFT_05102at 46.583 kb on + strand, within H281DRAFT_05102at 46.606 kb on + strand, within H281DRAFT_05102at 46.622 kb on + strand, within H281DRAFT_05102at 46.694 kb on + strand, within H281DRAFT_05102at 46.694 kb on + strand, within H281DRAFT_05102

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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45,970 + +0.3
45,972 + +0.9
45,973 - +0.7
46,008 - +0.3
46,041 + -0.3
46,042 - +0.3
46,120 - +0.2
46,411 + -0.4
46,411 + +0.2
46,411 + +1.8
46,411 + -1.4
46,411 + +0.0
46,411 + +0.3
46,411 + +0.4
46,512 + H281DRAFT_05102 0.19 -1.2
46,512 + H281DRAFT_05102 0.19 +0.8
46,583 + H281DRAFT_05102 0.35 +0.4
46,583 + H281DRAFT_05102 0.35 +0.8
46,606 + H281DRAFT_05102 0.40 +0.5
46,622 + H281DRAFT_05102 0.43 +1.2
46,694 + H281DRAFT_05102 0.59 +1.3
46,694 + H281DRAFT_05102 0.59 +0.1

Or see this region's nucleotide sequence