Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04835

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04834 and H281DRAFT_04835 overlap by 1 nucleotidesH281DRAFT_04835 and H281DRAFT_04836 are separated by 43 nucleotides H281DRAFT_04834: H281DRAFT_04834 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 267,671 to 268,768 _04834 H281DRAFT_04835: H281DRAFT_04835 - hypothetical protein, at 268,768 to 270,393 _04835 H281DRAFT_04836: H281DRAFT_04836 - Glycosyltransferase, at 270,437 to 271,813 _04836 Position (kb) 268 269 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 268.762 kb on + strandat 268.762 kb on + strandat 268.762 kb on + strandat 268.766 kb on + strandat 268.779 kb on - strandat 270.108 kb on + strand, within H281DRAFT_04835at 270.187 kb on + strand, within H281DRAFT_04835at 270.188 kb on - strandat 270.213 kb on + strand, within H281DRAFT_04835at 270.213 kb on + strand, within H281DRAFT_04835at 270.270 kb on + strandat 270.270 kb on + strandat 270.420 kb on + strandat 270.420 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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268,762 + +0.4
268,762 + -2.4
268,762 + -1.4
268,766 + +0.7
268,779 - +0.3
270,108 + H281DRAFT_04835 0.82 +0.3
270,187 + H281DRAFT_04835 0.87 +1.9
270,188 - -0.7
270,213 + H281DRAFT_04835 0.89 -2.9
270,213 + H281DRAFT_04835 0.89 -0.5
270,270 + -1.5
270,270 + +0.2
270,420 + -0.3
270,420 + -0.5

Or see this region's nucleotide sequence