Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04810

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04808 and H281DRAFT_04809 are separated by 177 nucleotidesH281DRAFT_04809 and H281DRAFT_04810 are separated by 17 nucleotidesH281DRAFT_04810 and H281DRAFT_04811 are separated by 267 nucleotides H281DRAFT_04808: H281DRAFT_04808 - chaperonin GroEL, at 242,702 to 244,342 _04808 H281DRAFT_04809: H281DRAFT_04809 - adenylylsulfate kinase, at 244,520 to 245,134 _04809 H281DRAFT_04810: H281DRAFT_04810 - Sulfotransferase family protein, at 245,152 to 246,363 _04810 H281DRAFT_04811: H281DRAFT_04811 - hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 246,631 to 247,491 _04811 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1at 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.341 kb on - strandat 244.341 kb on - strandat 244.516 kb on - strandat 244.521 kb on + strandat 244.521 kb on + strandat 244.565 kb on - strandat 244.571 kb on + strandat 244.689 kb on + strand, within H281DRAFT_04809at 244.689 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.742 kb on + strand, within H281DRAFT_04809at 244.742 kb on + strand, within H281DRAFT_04809at 244.742 kb on + strand, within H281DRAFT_04809at 244.742 kb on + strand, within H281DRAFT_04809at 244.743 kb on - strand, within H281DRAFT_04809at 244.743 kb on - strand, within H281DRAFT_04809at 244.743 kb on - strand, within H281DRAFT_04809at 244.743 kb on - strandat 244.743 kb on - strand, within H281DRAFT_04809at 244.819 kb on + strand, within H281DRAFT_04809at 244.819 kb on + strand, within H281DRAFT_04809at 244.820 kb on - strand, within H281DRAFT_04809at 244.820 kb on - strand, within H281DRAFT_04809at 244.820 kb on - strand, within H281DRAFT_04809at 244.822 kb on + strand, within H281DRAFT_04809at 244.823 kb on - strand, within H281DRAFT_04809at 244.828 kb on + strand, within H281DRAFT_04809at 244.828 kb on + strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.953 kb on + strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 245.086 kb on + strandat 245.273 kb on + strandat 245.274 kb on - strand, within H281DRAFT_04810at 245.274 kb on - strand, within H281DRAFT_04810at 245.447 kb on + strand, within H281DRAFT_04810at 245.447 kb on + strand, within H281DRAFT_04810at 245.447 kb on + strand, within H281DRAFT_04810at 245.448 kb on - strand, within H281DRAFT_04810at 245.448 kb on - strand, within H281DRAFT_04810at 245.451 kb on + strand, within H281DRAFT_04810at 245.452 kb on - strand, within H281DRAFT_04810at 245.452 kb on - strand, within H281DRAFT_04810at 245.492 kb on + strand, within H281DRAFT_04810at 245.493 kb on - strand, within H281DRAFT_04810at 245.493 kb on - strand, within H281DRAFT_04810at 245.536 kb on + strand, within H281DRAFT_04810at 245.536 kb on + strand, within H281DRAFT_04810at 245.537 kb on - strand, within H281DRAFT_04810at 245.570 kb on - strand, within H281DRAFT_04810at 245.589 kb on - strand, within H281DRAFT_04810at 245.607 kb on + strand, within H281DRAFT_04810at 245.607 kb on + strand, within H281DRAFT_04810at 245.715 kb on - strand, within H281DRAFT_04810at 245.737 kb on - strand, within H281DRAFT_04810at 245.793 kb on + strand, within H281DRAFT_04810at 246.099 kb on - strand, within H281DRAFT_04810at 246.104 kb on + strand, within H281DRAFT_04810at 246.112 kb on + strand, within H281DRAFT_04810at 246.112 kb on + strand, within H281DRAFT_04810at 246.113 kb on - strand, within H281DRAFT_04810at 246.149 kb on + strand, within H281DRAFT_04810at 246.174 kb on + strand, within H281DRAFT_04810at 246.174 kb on + strand, within H281DRAFT_04810at 246.174 kb on + strand, within H281DRAFT_04810at 246.174 kb on + strand, within H281DRAFT_04810at 246.180 kb on + strand, within H281DRAFT_04810at 246.180 kb on + strand, within H281DRAFT_04810at 246.181 kb on - strand, within H281DRAFT_04810at 246.185 kb on + strand, within H281DRAFT_04810at 246.186 kb on - strand, within H281DRAFT_04810at 246.220 kb on + strand, within H281DRAFT_04810at 246.220 kb on + strand, within H281DRAFT_04810at 246.265 kb on + strandat 246.289 kb on - strandat 246.363 kb on + strandat 246.364 kb on - strandat 246.364 kb on - strandat 246.379 kb on - strandat 246.421 kb on + strandat 246.422 kb on - strandat 246.422 kb on - strandat 246.428 kb on + strandat 246.471 kb on + strandat 246.724 kb on - strand, within H281DRAFT_04811at 246.725 kb on + strand, within H281DRAFT_04811at 246.725 kb on + strand, within H281DRAFT_04811at 246.725 kb on + strand, within H281DRAFT_04811at 246.767 kb on + strand, within H281DRAFT_04811at 246.773 kb on + strand, within H281DRAFT_04811at 246.773 kb on + strand, within H281DRAFT_04811at 246.927 kb on + strand, within H281DRAFT_04811at 246.928 kb on - strand, within H281DRAFT_04811at 246.928 kb on - strand, within H281DRAFT_04811at 246.969 kb on - strand, within H281DRAFT_04811at 247.204 kb on + strand, within H281DRAFT_04811at 247.204 kb on + strand, within H281DRAFT_04811at 247.225 kb on + strand, within H281DRAFT_04811at 247.226 kb on - strandat 247.226 kb on - strand, within H281DRAFT_04811at 247.226 kb on - strand, within H281DRAFT_04811at 247.359 kb on + strand, within H281DRAFT_04811at 247.359 kb on + strand, within H281DRAFT_04811at 247.359 kb on + strand, within H281DRAFT_04811at 247.360 kb on - strand, within H281DRAFT_04811at 247.360 kb on - strand, within H281DRAFT_04811at 247.361 kb on + strand, within H281DRAFT_04811

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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244,340 + -0.8
244,340 + -0.4
244,340 + -0.8
244,340 + -1.6
244,340 + -0.5
244,340 + -0.4
244,340 + -0.1
244,341 - -0.6
244,341 - -0.6
244,516 - +0.1
244,521 + -0.4
244,521 + -0.1
244,565 - +0.9
244,571 + +0.1
244,689 + H281DRAFT_04809 0.27 +0.0
244,689 + H281DRAFT_04809 0.27 +0.1
244,740 + H281DRAFT_04809 0.36 +0.2
244,740 + H281DRAFT_04809 0.36 +0.2
244,740 + H281DRAFT_04809 0.36 +0.2
244,740 + H281DRAFT_04809 0.36 +0.8
244,740 + H281DRAFT_04809 0.36 +0.4
244,741 - H281DRAFT_04809 0.36 +0.5
244,741 - H281DRAFT_04809 0.36 +0.4
244,741 - H281DRAFT_04809 0.36 -0.1
244,741 - H281DRAFT_04809 0.36 +1.0
244,741 - H281DRAFT_04809 0.36 +0.1
244,741 - H281DRAFT_04809 0.36 +0.9
244,741 - H281DRAFT_04809 0.36 +0.5
244,741 - H281DRAFT_04809 0.36 +0.5
244,742 + H281DRAFT_04809 0.36 -0.5
244,742 + H281DRAFT_04809 0.36 -1.9
244,742 + H281DRAFT_04809 0.36 +0.1
244,742 + H281DRAFT_04809 0.36 +0.5
244,743 - H281DRAFT_04809 0.36 -0.4
244,743 - H281DRAFT_04809 0.36 -0.5
244,743 - H281DRAFT_04809 0.36 +0.2
244,743 - +0.1
244,743 - H281DRAFT_04809 0.36 +0.9
244,819 + H281DRAFT_04809 0.49 -0.1
244,819 + H281DRAFT_04809 0.49 -0.1
244,820 - H281DRAFT_04809 0.49 -0.1
244,820 - H281DRAFT_04809 0.49 -0.1
244,820 - H281DRAFT_04809 0.49 +1.4
244,822 + H281DRAFT_04809 0.49 +1.2
244,823 - H281DRAFT_04809 0.49 +0.3
244,828 + H281DRAFT_04809 0.50 -0.3
244,828 + H281DRAFT_04809 0.50 +0.3
244,829 - H281DRAFT_04809 0.50 -0.9
244,829 - H281DRAFT_04809 0.50 +0.2
244,829 - H281DRAFT_04809 0.50 +0.3
244,829 - H281DRAFT_04809 0.50 +0.4
244,829 - H281DRAFT_04809 0.50 +0.6
244,953 + H281DRAFT_04809 0.70 +0.4
244,954 - H281DRAFT_04809 0.71 -0.2
244,954 - H281DRAFT_04809 0.71 -0.0
244,954 - H281DRAFT_04809 0.71 +0.3
244,954 - H281DRAFT_04809 0.71 +0.2
244,954 - H281DRAFT_04809 0.71 +0.5
245,086 + +0.6
245,273 + +0.5
245,274 - H281DRAFT_04810 0.10 +0.2
245,274 - H281DRAFT_04810 0.10 -0.7
245,447 + H281DRAFT_04810 0.24 +0.4
245,447 + H281DRAFT_04810 0.24 +0.4
245,447 + H281DRAFT_04810 0.24 +0.7
245,448 - H281DRAFT_04810 0.24 +0.4
245,448 - H281DRAFT_04810 0.24 +0.2
245,451 + H281DRAFT_04810 0.25 -0.7
245,452 - H281DRAFT_04810 0.25 -0.6
245,452 - H281DRAFT_04810 0.25 -0.1
245,492 + H281DRAFT_04810 0.28 +0.1
245,493 - H281DRAFT_04810 0.28 -0.2
245,493 - H281DRAFT_04810 0.28 +0.6
245,536 + H281DRAFT_04810 0.32 +0.5
245,536 + H281DRAFT_04810 0.32 -0.5
245,537 - H281DRAFT_04810 0.32 +0.7
245,570 - H281DRAFT_04810 0.34 +0.3
245,589 - H281DRAFT_04810 0.36 +0.5
245,607 + H281DRAFT_04810 0.38 +0.6
245,607 + H281DRAFT_04810 0.38 +1.3
245,715 - H281DRAFT_04810 0.46 -0.6
245,737 - H281DRAFT_04810 0.48 -0.2
245,793 + H281DRAFT_04810 0.53 -1.0
246,099 - H281DRAFT_04810 0.78 +0.1
246,104 + H281DRAFT_04810 0.79 +0.5
246,112 + H281DRAFT_04810 0.79 -1.2
246,112 + H281DRAFT_04810 0.79 -0.3
246,113 - H281DRAFT_04810 0.79 +0.3
246,149 + H281DRAFT_04810 0.82 -0.2
246,174 + H281DRAFT_04810 0.84 -0.4
246,174 + H281DRAFT_04810 0.84 +0.3
246,174 + H281DRAFT_04810 0.84 +0.3
246,174 + H281DRAFT_04810 0.84 -0.7
246,180 + H281DRAFT_04810 0.85 -1.7
246,180 + H281DRAFT_04810 0.85 +1.3
246,181 - H281DRAFT_04810 0.85 +0.2
246,185 + H281DRAFT_04810 0.85 +0.2
246,186 - H281DRAFT_04810 0.85 -1.4
246,220 + H281DRAFT_04810 0.88 +0.5
246,220 + H281DRAFT_04810 0.88 -0.0
246,265 + -0.4
246,289 - -0.1
246,363 + +1.5
246,364 - +0.4
246,364 - -0.2
246,379 - +0.3
246,421 + +1.2
246,422 - -0.3
246,422 - +1.4
246,428 + -0.4
246,471 + +0.5
246,724 - H281DRAFT_04811 0.11 +0.7
246,725 + H281DRAFT_04811 0.11 -0.7
246,725 + H281DRAFT_04811 0.11 +0.1
246,725 + H281DRAFT_04811 0.11 -0.1
246,767 + H281DRAFT_04811 0.16 +1.2
246,773 + H281DRAFT_04811 0.16 +0.7
246,773 + H281DRAFT_04811 0.16 -1.1
246,927 + H281DRAFT_04811 0.34 +1.3
246,928 - H281DRAFT_04811 0.34 -0.1
246,928 - H281DRAFT_04811 0.34 +0.4
246,969 - H281DRAFT_04811 0.39 +0.6
247,204 + H281DRAFT_04811 0.67 +0.5
247,204 + H281DRAFT_04811 0.67 +0.2
247,225 + H281DRAFT_04811 0.69 +0.4
247,226 - +1.4
247,226 - H281DRAFT_04811 0.69 +0.5
247,226 - H281DRAFT_04811 0.69 -0.1
247,359 + H281DRAFT_04811 0.85 -0.7
247,359 + H281DRAFT_04811 0.85 +0.4
247,359 + H281DRAFT_04811 0.85 -0.0
247,360 - H281DRAFT_04811 0.85 -0.9
247,360 - H281DRAFT_04811 0.85 -0.2
247,361 + H281DRAFT_04811 0.85 +1.2

Or see this region's nucleotide sequence