Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04429

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04428 and H281DRAFT_04429 are separated by 693 nucleotidesH281DRAFT_04429 and H281DRAFT_04430 overlap by 115 nucleotidesH281DRAFT_04430 and H281DRAFT_04431 are separated by 195 nucleotides H281DRAFT_04428: H281DRAFT_04428 - Uncharacterized protein YjbI, contains pentapeptide repeats, at 146,020 to 146,760 _04428 H281DRAFT_04429: H281DRAFT_04429 - hypothetical protein, at 147,454 to 147,714 _04429 H281DRAFT_04430: H281DRAFT_04430 - hypothetical protein, at 147,600 to 147,926 _04430 H281DRAFT_04431: H281DRAFT_04431 - Membrane-bound metallopeptidase, at 148,122 to 148,838 _04431 Position (kb) 147 148Strain fitness (log2 ratio) -3 -2 -1 0 1at 146.714 kb on + strandat 146.714 kb on + strandat 146.758 kb on + strandat 146.758 kb on + strandat 146.825 kb on + strandat 146.826 kb on - strandat 146.838 kb on - strandat 146.967 kb on + strandat 147.062 kb on + strandat 147.062 kb on + strandat 147.063 kb on - strandat 147.406 kb on + strandat 147.406 kb on + strandat 147.426 kb on + strandat 147.434 kb on + strandat 147.448 kb on + strandat 147.449 kb on - strandat 147.449 kb on - strandat 147.470 kb on + strandat 147.470 kb on + strandat 147.471 kb on - strandat 147.601 kb on + strandat 147.609 kb on - strandat 147.609 kb on - strandat 147.718 kb on + strand, within H281DRAFT_04430at 147.719 kb on - strand, within H281DRAFT_04430at 147.719 kb on - strand, within H281DRAFT_04430at 147.824 kb on - strand, within H281DRAFT_04430at 147.824 kb on - strand, within H281DRAFT_04430at 147.939 kb on + strandat 147.939 kb on + strandat 147.992 kb on + strandat 147.992 kb on + strandat 147.992 kb on + strandat 147.992 kb on + strandat 147.994 kb on + strandat 147.995 kb on - strandat 148.024 kb on + strandat 148.100 kb on + strandat 148.100 kb on + strandat 148.101 kb on - strandat 148.123 kb on + strandat 148.297 kb on + strand, within H281DRAFT_04431at 148.623 kb on + strand, within H281DRAFT_04431at 148.624 kb on - strand, within H281DRAFT_04431at 148.624 kb on - strand, within H281DRAFT_04431at 148.700 kb on + strand, within H281DRAFT_04431at 148.700 kb on + strand, within H281DRAFT_04431at 148.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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146,714 + -0.1
146,714 + +1.2
146,758 + -0.5
146,758 + +0.0
146,825 + +0.2
146,826 - +0.6
146,838 - +0.1
146,967 + +0.7
147,062 + -0.3
147,062 + +0.4
147,063 - -0.2
147,406 + -1.1
147,406 + -0.5
147,426 + +0.1
147,434 + -0.3
147,448 + +0.4
147,449 - -0.0
147,449 - -3.0
147,470 + +0.3
147,470 + -0.2
147,471 - -1.3
147,601 + -0.8
147,609 - -0.5
147,609 - -0.2
147,718 + H281DRAFT_04430 0.36 +0.8
147,719 - H281DRAFT_04430 0.36 +0.7
147,719 - H281DRAFT_04430 0.36 -0.0
147,824 - H281DRAFT_04430 0.69 -0.4
147,824 - H281DRAFT_04430 0.69 -0.5
147,939 + -0.6
147,939 + -0.2
147,992 + -0.4
147,992 + +0.3
147,992 + +0.1
147,992 + +0.4
147,994 + +0.1
147,995 - +0.5
148,024 + -0.3
148,100 + +0.4
148,100 + -0.5
148,101 - +0.2
148,123 + -0.2
148,297 + H281DRAFT_04431 0.24 +0.4
148,623 + H281DRAFT_04431 0.70 +0.3
148,624 - H281DRAFT_04431 0.70 -0.0
148,624 - H281DRAFT_04431 0.70 +0.6
148,700 + H281DRAFT_04431 0.81 +0.4
148,700 + H281DRAFT_04431 0.81 +0.2
148,700 + +0.7

Or see this region's nucleotide sequence