Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04067

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04066 and H281DRAFT_04067 are separated by 278 nucleotidesH281DRAFT_04067 and H281DRAFT_04068 are separated by 10 nucleotidesH281DRAFT_04068 and H281DRAFT_04069 are separated by 241 nucleotides H281DRAFT_04066: H281DRAFT_04066 - DNA replication and repair protein RadC, at 167,694 to 168,458 _04066 H281DRAFT_04067: H281DRAFT_04067 - LSU ribosomal protein L28P, at 168,737 to 168,970 _04067 H281DRAFT_04068: H281DRAFT_04068 - LSU ribosomal protein L33P, at 168,981 to 169,148 _04068 H281DRAFT_04069: H281DRAFT_04069 - L-aspartate oxidase, at 169,390 to 170,988 _04069 Position (kb) 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1at 167.851 kb on + strand, within H281DRAFT_04066at 167.852 kb on - strand, within H281DRAFT_04066at 167.852 kb on - strand, within H281DRAFT_04066at 167.852 kb on - strand, within H281DRAFT_04066at 167.881 kb on + strand, within H281DRAFT_04066at 167.976 kb on + strand, within H281DRAFT_04066at 167.976 kb on + strand, within H281DRAFT_04066at 167.977 kb on - strand, within H281DRAFT_04066at 167.977 kb on - strand, within H281DRAFT_04066at 168.230 kb on + strand, within H281DRAFT_04066at 168.241 kb on - strand, within H281DRAFT_04066at 168.302 kb on + strand, within H281DRAFT_04066at 168.302 kb on + strand, within H281DRAFT_04066at 168.303 kb on - strand, within H281DRAFT_04066at 168.410 kb on - strandat 168.428 kb on - strandat 168.428 kb on - strandat 168.428 kb on - strandat 168.429 kb on + strandat 168.429 kb on + strandat 168.429 kb on + strandat 168.483 kb on + strandat 168.483 kb on + strandat 168.483 kb on + strandat 169.142 kb on + strandat 169.269 kb on + strandat 169.269 kb on + strandat 169.269 kb on + strandat 169.270 kb on - strandat 169.273 kb on + strandat 169.273 kb on + strandat 169.273 kb on + strandat 169.273 kb on + strandat 169.274 kb on - strandat 169.274 kb on - strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.279 kb on + strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.280 kb on - strandat 169.282 kb on - strandat 169.282 kb on - strandat 169.282 kb on - strandat 169.334 kb on + strandat 169.335 kb on - strandat 169.359 kb on + strandat 169.359 kb on + strandat 169.359 kb on + strandat 169.737 kb on + strand, within H281DRAFT_04069at 169.785 kb on - strand, within H281DRAFT_04069at 169.847 kb on - strand, within H281DRAFT_04069at 169.910 kb on - strand, within H281DRAFT_04069at 169.959 kb on + strand, within H281DRAFT_04069

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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167,851 + H281DRAFT_04066 0.21 -0.0
167,852 - H281DRAFT_04066 0.21 -0.7
167,852 - H281DRAFT_04066 0.21 +0.5
167,852 - H281DRAFT_04066 0.21 -0.3
167,881 + H281DRAFT_04066 0.24 +0.1
167,976 + H281DRAFT_04066 0.37 +0.8
167,976 + H281DRAFT_04066 0.37 -0.0
167,977 - H281DRAFT_04066 0.37 +0.3
167,977 - H281DRAFT_04066 0.37 -0.0
168,230 + H281DRAFT_04066 0.70 -0.1
168,241 - H281DRAFT_04066 0.72 +0.1
168,302 + H281DRAFT_04066 0.79 +0.4
168,302 + H281DRAFT_04066 0.79 +0.9
168,303 - H281DRAFT_04066 0.80 +0.2
168,410 - -0.5
168,428 - -0.1
168,428 - -0.4
168,428 - +0.1
168,429 + -0.8
168,429 + +0.8
168,429 + +0.5
168,483 + -0.1
168,483 + +0.2
168,483 + -1.1
169,142 + -0.7
169,269 + +0.2
169,269 + -0.3
169,269 + -0.5
169,270 - -0.2
169,273 + +0.6
169,273 + +0.5
169,273 + +1.4
169,273 + +0.5
169,274 - -1.1
169,274 - -0.1
169,279 + -0.1
169,279 + -0.2
169,279 + -0.1
169,279 + +0.6
169,279 + +0.6
169,279 + +0.2
169,279 + -0.6
169,279 + +0.4
169,279 + +0.4
169,279 + +0.1
169,280 - +1.0
169,280 - +0.8
169,280 - -0.2
169,280 - +1.6
169,280 - -0.0
169,280 - -1.2
169,282 - -0.1
169,282 - +0.2
169,282 - -0.5
169,334 + -0.2
169,335 - +0.9
169,359 + +0.7
169,359 + -0.7
169,359 + +0.4
169,737 + H281DRAFT_04069 0.22 -1.4
169,785 - H281DRAFT_04069 0.25 -2.8
169,847 - H281DRAFT_04069 0.29 -0.2
169,910 - H281DRAFT_04069 0.33 -1.0
169,959 + H281DRAFT_04069 0.36 -1.6

Or see this region's nucleotide sequence