Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03586 and H281DRAFT_03587 are separated by 12 nucleotides H281DRAFT_03587 and H281DRAFT_03588 are separated by 176 nucleotides H281DRAFT_03588 and H281DRAFT_03589 are separated by 124 nucleotides
H281DRAFT_03586: H281DRAFT_03586 - L-threonine 3-dehydrogenase, at 94,454 to 95,485
_03586
H281DRAFT_03587: H281DRAFT_03587 - 2-amino-3-ketobutyrate coenzyme A ligase, at 95,498 to 96,697
_03587
H281DRAFT_03588: H281DRAFT_03588 - transcriptional regulator, XRE family with cupin sensor, at 96,874 to 97,500
_03588
H281DRAFT_03589: H281DRAFT_03589 - Protein of unknown function (DUF2471), at 97,625 to 98,023
_03589
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1 at 94.525 kb on - strand at 94.599 kb on + strand, within H281DRAFT_03586 at 94.600 kb on - strand, within H281DRAFT_03586 at 94.627 kb on - strand, within H281DRAFT_03586 at 94.627 kb on - strand, within H281DRAFT_03586 at 94.627 kb on - strand, within H281DRAFT_03586 at 94.627 kb on - strand, within H281DRAFT_03586 at 95.115 kb on + strand, within H281DRAFT_03586 at 95.141 kb on + strand, within H281DRAFT_03586 at 95.162 kb on - strand, within H281DRAFT_03586 at 95.162 kb on - strand, within H281DRAFT_03586 at 95.292 kb on + strand, within H281DRAFT_03586 at 95.293 kb on - strand, within H281DRAFT_03586 at 95.356 kb on + strand, within H281DRAFT_03586 at 95.485 kb on + strand at 95.612 kb on + strand at 95.640 kb on + strand, within H281DRAFT_03587 at 95.641 kb on - strand, within H281DRAFT_03587 at 95.798 kb on + strand, within H281DRAFT_03587 at 95.799 kb on - strand, within H281DRAFT_03587 at 95.799 kb on - strand, within H281DRAFT_03587 at 95.799 kb on - strand, within H281DRAFT_03587 at 95.826 kb on - strand, within H281DRAFT_03587 at 95.886 kb on + strand, within H281DRAFT_03587 at 95.940 kb on + strand, within H281DRAFT_03587 at 95.940 kb on + strand, within H281DRAFT_03587 at 95.941 kb on - strand, within H281DRAFT_03587 at 95.941 kb on - strand, within H281DRAFT_03587 at 95.941 kb on - strand, within H281DRAFT_03587 at 96.240 kb on + strand, within H281DRAFT_03587 at 96.684 kb on + strand at 97.193 kb on + strand, within H281DRAFT_03588 at 97.420 kb on + strand, within H281DRAFT_03588 at 97.421 kb on - strand, within H281DRAFT_03588 at 97.421 kb on - strand, within H281DRAFT_03588 at 97.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 94,525 - -1.0 94,599 + H281DRAFT_03586 0.14 -0.4 94,600 - H281DRAFT_03586 0.14 +0.3 94,627 - H281DRAFT_03586 0.17 +0.1 94,627 - H281DRAFT_03586 0.17 +0.3 94,627 - H281DRAFT_03586 0.17 -0.4 94,627 - H281DRAFT_03586 0.17 +0.8 95,115 + H281DRAFT_03586 0.64 +0.7 95,141 + H281DRAFT_03586 0.67 -1.1 95,162 - H281DRAFT_03586 0.69 -0.0 95,162 - H281DRAFT_03586 0.69 -0.2 95,292 + H281DRAFT_03586 0.81 -0.7 95,293 - H281DRAFT_03586 0.81 -0.5 95,356 + H281DRAFT_03586 0.87 +0.1 95,485 + -0.3 95,612 + +0.5 95,640 + H281DRAFT_03587 0.12 -0.3 95,641 - H281DRAFT_03587 0.12 +0.4 95,798 + H281DRAFT_03587 0.25 -2.3 95,799 - H281DRAFT_03587 0.25 +0.1 95,799 - H281DRAFT_03587 0.25 -0.8 95,799 - H281DRAFT_03587 0.25 -0.0 95,826 - H281DRAFT_03587 0.27 -1.0 95,886 + H281DRAFT_03587 0.32 -0.2 95,940 + H281DRAFT_03587 0.37 +0.1 95,940 + H281DRAFT_03587 0.37 +0.3 95,941 - H281DRAFT_03587 0.37 -0.1 95,941 - H281DRAFT_03587 0.37 -0.9 95,941 - H281DRAFT_03587 0.37 -0.1 96,240 + H281DRAFT_03587 0.62 -0.8 96,684 + +1.0 97,193 + H281DRAFT_03588 0.51 -0.4 97,420 + H281DRAFT_03588 0.87 +0.2 97,421 - H281DRAFT_03588 0.87 +0.5 97,421 - H281DRAFT_03588 0.87 +0.1 97,601 + -0.9
Or see this region's nucleotide sequence