Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02863

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02861 and H281DRAFT_02863 are separated by 297 nucleotidesH281DRAFT_02863 and H281DRAFT_02864 are separated by 9 nucleotidesH281DRAFT_02864 and H281DRAFT_02865 are separated by 0 nucleotides H281DRAFT_02861: H281DRAFT_02861 - precorrin-6Y C5,15-methyltransferase (decarboxylating), at 454,534 to 455,793 _02861 H281DRAFT_02863: H281DRAFT_02863 - precorrin-3B synthase, at 456,091 to 457,698 _02863 H281DRAFT_02864: H281DRAFT_02864 - precorrin-8X methylmutase, at 457,708 to 458,334 _02864 H281DRAFT_02865: H281DRAFT_02865 - precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase, at 458,335 to 459,075 _02865 Position (kb) 456 457 458Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 455.882 kb on + strandat 455.882 kb on + strandat 455.882 kb on + strandat 455.882 kb on + strandat 455.883 kb on - strandat 455.885 kb on + strandat 455.886 kb on - strandat 455.886 kb on - strandat 455.886 kb on - strandat 455.912 kb on - strandat 455.961 kb on + strandat 455.961 kb on + strandat 455.962 kb on - strandat 456.086 kb on + strandat 456.262 kb on - strand, within H281DRAFT_02863at 456.984 kb on + strand, within H281DRAFT_02863at 456.985 kb on - strand, within H281DRAFT_02863at 456.985 kb on - strand, within H281DRAFT_02863at 456.993 kb on - strand, within H281DRAFT_02863at 457.078 kb on + strand, within H281DRAFT_02863at 457.185 kb on + strand, within H281DRAFT_02863at 457.186 kb on - strand, within H281DRAFT_02863at 457.585 kb on + strandat 457.586 kb on - strandat 457.586 kb on - strandat 457.717 kb on + strandat 457.741 kb on + strandat 457.742 kb on - strandat 458.002 kb on - strand, within H281DRAFT_02864at 458.254 kb on + strand, within H281DRAFT_02864at 458.254 kb on + strand, within H281DRAFT_02864at 458.254 kb on + strand, within H281DRAFT_02864at 458.364 kb on - strandat 458.364 kb on - strandat 458.364 kb on - strandat 458.364 kb on - strandat 458.366 kb on - strandat 458.409 kb on - strand, within H281DRAFT_02865at 458.450 kb on - strand, within H281DRAFT_02865at 458.537 kb on - strand, within H281DRAFT_02865at 458.575 kb on + strand, within H281DRAFT_02865at 458.575 kb on + strand, within H281DRAFT_02865at 458.618 kb on + strand, within H281DRAFT_02865at 458.618 kb on + strand, within H281DRAFT_02865at 458.693 kb on - strand, within H281DRAFT_02865at 458.693 kb on - strand, within H281DRAFT_02865at 458.698 kb on + strand, within H281DRAFT_02865at 458.698 kb on + strand, within H281DRAFT_02865

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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455,882 + -2.5
455,882 + -0.7
455,882 + -0.6
455,882 + -0.6
455,883 - -0.7
455,885 + +0.0
455,886 - -1.6
455,886 - -4.1
455,886 - -2.6
455,912 - -0.9
455,961 + +0.8
455,961 + +0.1
455,962 - -0.4
456,086 + -0.5
456,262 - H281DRAFT_02863 0.11 -0.7
456,984 + H281DRAFT_02863 0.56 -2.6
456,985 - H281DRAFT_02863 0.56 -1.4
456,985 - H281DRAFT_02863 0.56 -2.4
456,993 - H281DRAFT_02863 0.56 -1.0
457,078 + H281DRAFT_02863 0.61 -0.1
457,185 + H281DRAFT_02863 0.68 -2.1
457,186 - H281DRAFT_02863 0.68 -1.7
457,585 + -1.7
457,586 - -1.3
457,586 - -1.0
457,717 + -1.8
457,741 + -1.1
457,742 - -1.3
458,002 - H281DRAFT_02864 0.47 -2.3
458,254 + H281DRAFT_02864 0.87 -2.1
458,254 + H281DRAFT_02864 0.87 -3.2
458,254 + H281DRAFT_02864 0.87 -1.0
458,364 - -1.1
458,364 - -1.3
458,364 - -0.2
458,364 - -1.7
458,366 - -0.7
458,409 - H281DRAFT_02865 0.10 -0.7
458,450 - H281DRAFT_02865 0.16 -3.2
458,537 - H281DRAFT_02865 0.27 -1.1
458,575 + H281DRAFT_02865 0.32 -1.2
458,575 + H281DRAFT_02865 0.32 -2.1
458,618 + H281DRAFT_02865 0.38 -1.6
458,618 + H281DRAFT_02865 0.38 -1.6
458,693 - H281DRAFT_02865 0.48 -1.9
458,693 - H281DRAFT_02865 0.48 -1.7
458,698 + H281DRAFT_02865 0.49 +0.2
458,698 + H281DRAFT_02865 0.49 -1.4

Or see this region's nucleotide sequence