Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02756

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02754 and H281DRAFT_02755 overlap by 8 nucleotidesH281DRAFT_02755 and H281DRAFT_02756 are separated by 215 nucleotidesH281DRAFT_02756 and H281DRAFT_02757 are separated by 43 nucleotidesH281DRAFT_02757 and H281DRAFT_02758 are separated by 143 nucleotides H281DRAFT_02754: H281DRAFT_02754 - Glucose/arabinose dehydrogenase, beta-propeller fold, at 342,440 to 343,759 _02754 H281DRAFT_02755: H281DRAFT_02755 - Uncharacterized membrane protein, at 343,752 to 344,201 _02755 H281DRAFT_02756: H281DRAFT_02756 - Cupin domain protein, at 344,417 to 344,812 _02756 H281DRAFT_02757: H281DRAFT_02757 - alkylhydroperoxidase AhpD family core domain-containing protein, at 344,856 to 345,335 _02757 H281DRAFT_02758: H281DRAFT_02758 - putative membrane protein, at 345,479 to 346,477 _02758 Position (kb) 344 345Strain fitness (log2 ratio) -1 0 1 2at 343.754 kb on - strandat 343.980 kb on + strand, within H281DRAFT_02755at 344.064 kb on + strand, within H281DRAFT_02755at 344.083 kb on + strand, within H281DRAFT_02755at 344.123 kb on - strand, within H281DRAFT_02755at 344.269 kb on + strandat 344.611 kb on - strand, within H281DRAFT_02756at 344.611 kb on - strand, within H281DRAFT_02756at 345.314 kb on + strandat 345.316 kb on + strandat 345.354 kb on - strandat 345.639 kb on + strand, within H281DRAFT_02758at 345.639 kb on + strand, within H281DRAFT_02758at 345.639 kb on + strand, within H281DRAFT_02758

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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343,754 - +1.4
343,980 + H281DRAFT_02755 0.51 -0.7
344,064 + H281DRAFT_02755 0.69 +0.6
344,083 + H281DRAFT_02755 0.74 +0.4
344,123 - H281DRAFT_02755 0.82 -0.5
344,269 + -0.8
344,611 - H281DRAFT_02756 0.49 -0.5
344,611 - H281DRAFT_02756 0.49 +1.8
345,314 + +0.2
345,316 + -1.0
345,354 - +0.1
345,639 + H281DRAFT_02758 0.16 +0.2
345,639 + H281DRAFT_02758 0.16 -0.4
345,639 + H281DRAFT_02758 0.16 +0.2

Or see this region's nucleotide sequence