Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01996 and H281DRAFT_01997 are separated by 167 nucleotides H281DRAFT_01997 and H281DRAFT_01998 are separated by 18 nucleotides H281DRAFT_01998 and H281DRAFT_01999 overlap by 28 nucleotides H281DRAFT_01999 and H281DRAFT_02000 are separated by 114 nucleotides
H281DRAFT_01996: H281DRAFT_01996 - malonyl-CoA O-methyltransferase, at 114,892 to 115,857
_01996
H281DRAFT_01997: H281DRAFT_01997 - comF family protein, at 116,025 to 116,726
_01997
H281DRAFT_01998: H281DRAFT_01998 - tRNA (cytidine/uridine-2'-O-)-methyltransferase, at 116,745 to 117,215
_01998
H281DRAFT_01999: H281DRAFT_01999 - O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain, at 117,188 to 117,736
_01999
H281DRAFT_02000: H281DRAFT_02000 - glycerol-3-phosphate dehydrogenase (NAD(P)+), at 117,851 to 118,849
_02000
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 115.886 kb on + strand at 115.886 kb on + strand at 115.886 kb on + strand at 115.887 kb on - strand at 115.887 kb on - strand at 115.956 kb on + strand at 115.956 kb on + strand at 115.957 kb on - strand at 115.957 kb on - strand at 116.106 kb on + strand, within H281DRAFT_01997 at 116.184 kb on + strand, within H281DRAFT_01997 at 116.184 kb on + strand, within H281DRAFT_01997 at 116.184 kb on + strand, within H281DRAFT_01997 at 116.427 kb on + strand, within H281DRAFT_01997 at 116.428 kb on - strand, within H281DRAFT_01997 at 116.429 kb on + strand, within H281DRAFT_01997 at 116.429 kb on + strand, within H281DRAFT_01997 at 116.605 kb on + strand, within H281DRAFT_01997 at 116.605 kb on + strand, within H281DRAFT_01997 at 116.606 kb on - strand, within H281DRAFT_01997 at 116.606 kb on - strand, within H281DRAFT_01997 at 116.606 kb on - strand, within H281DRAFT_01997 at 116.606 kb on - strand, within H281DRAFT_01997 at 116.623 kb on + strand, within H281DRAFT_01997 at 116.623 kb on + strand, within H281DRAFT_01997 at 116.623 kb on + strand, within H281DRAFT_01997 at 116.623 kb on + strand, within H281DRAFT_01997 at 116.624 kb on - strand, within H281DRAFT_01997 at 116.624 kb on - strand, within H281DRAFT_01997 at 116.624 kb on - strand, within H281DRAFT_01997 at 116.624 kb on - strand, within H281DRAFT_01997 at 116.725 kb on - strand at 116.731 kb on + strand at 116.732 kb on - strand at 116.744 kb on + strand at 116.744 kb on + strand at 116.744 kb on + strand at 116.744 kb on + strand at 116.744 kb on + strand at 116.745 kb on - strand at 116.745 kb on - strand at 116.745 kb on - strand at 116.745 kb on - strand at 116.806 kb on + strand, within H281DRAFT_01998 at 116.895 kb on + strand, within H281DRAFT_01998 at 116.896 kb on - strand, within H281DRAFT_01998 at 116.905 kb on - strand, within H281DRAFT_01998 at 116.945 kb on - strand, within H281DRAFT_01998 at 117.508 kb on - strand, within H281DRAFT_01999 at 117.508 kb on - strand, within H281DRAFT_01999 at 117.649 kb on + strand, within H281DRAFT_01999 at 117.649 kb on + strand, within H281DRAFT_01999 at 117.649 kb on + strand, within H281DRAFT_01999 at 117.650 kb on - strand, within H281DRAFT_01999 at 117.725 kb on + strand at 117.725 kb on + strand at 117.725 kb on + strand at 117.725 kb on + strand at 117.725 kb on + strand at 117.725 kb on + strand at 117.726 kb on - strand at 117.726 kb on - strand at 117.726 kb on - strand at 117.726 kb on - strand at 117.726 kb on - strand at 117.726 kb on - strand at 117.726 kb on - strand at 117.726 kb on - strand at 117.726 kb on - strand at 117.726 kb on - strand at 117.727 kb on + strand at 117.728 kb on - strand at 117.728 kb on - strand at 117.736 kb on + strand at 117.736 kb on + strand at 117.736 kb on + strand at 117.737 kb on - strand at 117.737 kb on - strand at 117.805 kb on + strand at 117.805 kb on + strand at 117.806 kb on - strand at 117.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 115,886 + +0.2 115,886 + -0.6 115,886 + -0.3 115,887 - -1.1 115,887 - -0.2 115,956 + +0.8 115,956 + +0.1 115,957 - +1.6 115,957 - +0.3 116,106 + H281DRAFT_01997 0.12 +0.6 116,184 + H281DRAFT_01997 0.23 +0.9 116,184 + H281DRAFT_01997 0.23 +0.4 116,184 + H281DRAFT_01997 0.23 +0.4 116,427 + H281DRAFT_01997 0.57 -0.5 116,428 - H281DRAFT_01997 0.57 -0.1 116,429 + H281DRAFT_01997 0.58 -1.3 116,429 + H281DRAFT_01997 0.58 -0.3 116,605 + H281DRAFT_01997 0.83 +0.3 116,605 + H281DRAFT_01997 0.83 -0.4 116,606 - H281DRAFT_01997 0.83 -0.4 116,606 - H281DRAFT_01997 0.83 -1.1 116,606 - H281DRAFT_01997 0.83 -2.8 116,606 - H281DRAFT_01997 0.83 +0.3 116,623 + H281DRAFT_01997 0.85 +0.2 116,623 + H281DRAFT_01997 0.85 +0.3 116,623 + H281DRAFT_01997 0.85 -0.4 116,623 + H281DRAFT_01997 0.85 +0.1 116,624 - H281DRAFT_01997 0.85 -0.0 116,624 - H281DRAFT_01997 0.85 +1.0 116,624 - H281DRAFT_01997 0.85 -0.3 116,624 - H281DRAFT_01997 0.85 +0.9 116,725 - +0.7 116,731 + +0.5 116,732 - -0.0 116,744 + -0.5 116,744 + -0.1 116,744 + +1.7 116,744 + -0.7 116,744 + +0.1 116,745 - +0.5 116,745 - -0.2 116,745 - +0.2 116,745 - -0.6 116,806 + H281DRAFT_01998 0.13 +0.0 116,895 + H281DRAFT_01998 0.32 +0.2 116,896 - H281DRAFT_01998 0.32 -0.1 116,905 - H281DRAFT_01998 0.34 +1.3 116,945 - H281DRAFT_01998 0.42 +0.1 117,508 - H281DRAFT_01999 0.58 -0.7 117,508 - H281DRAFT_01999 0.58 -0.2 117,649 + H281DRAFT_01999 0.84 -0.5 117,649 + H281DRAFT_01999 0.84 -0.1 117,649 + H281DRAFT_01999 0.84 -0.4 117,650 - H281DRAFT_01999 0.84 +0.0 117,725 + +1.1 117,725 + +0.8 117,725 + +1.1 117,725 + +0.4 117,725 + +0.0 117,725 + -2.1 117,726 - -2.0 117,726 - -0.0 117,726 - -0.1 117,726 - +0.1 117,726 - -1.0 117,726 - +0.0 117,726 - -0.9 117,726 - -0.4 117,726 - +0.2 117,726 - -0.4 117,727 + +0.2 117,728 - -0.0 117,728 - +0.0 117,736 + +0.2 117,736 + -0.4 117,736 + +0.2 117,737 - +0.7 117,737 - +0.5 117,805 + -0.4 117,805 + +2.3 117,806 - -0.2 117,852 + +0.4
Or see this region's nucleotide sequence