Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01887 and H281DRAFT_01888 are separated by 22 nucleotides H281DRAFT_01888 and H281DRAFT_01889 overlap by 4 nucleotides H281DRAFT_01889 and H281DRAFT_01890 are separated by 56 nucleotides H281DRAFT_01890 and H281DRAFT_01891 are separated by 73 nucleotides
H281DRAFT_01887: H281DRAFT_01887 - threonine ammonia-lyase, biosynthetic, long form, at 1 to 846
_01887
H281DRAFT_01888: H281DRAFT_01888 - 5'-nucleotidase, at 869 to 1,771
_01888
H281DRAFT_01889: H281DRAFT_01889 - 7-cyano-7-deazaguanine reductase, at 1,768 to 2,592
_01889
H281DRAFT_01890: H281DRAFT_01890 - reactive intermediate/imine deaminase, at 2,649 to 3,035
_01890
H281DRAFT_01891: H281DRAFT_01891 - N-acyl-D-amino-acid deacylase, at 3,109 to 4,590
_01891
Position (kb) 1
2
3 Strain fitness (log2 ratio) -1
0
1
2
3 at 0.827 kb on - strand at 0.827 kb on - strand at 0.898 kb on - strand at 0.951 kb on - strand at 0.951 kb on - strand at 0.966 kb on + strand, within H281DRAFT_01888 at 0.966 kb on + strand, within H281DRAFT_01888 at 0.966 kb on + strand, within H281DRAFT_01888 at 0.974 kb on + strand, within H281DRAFT_01888 at 0.974 kb on + strand, within H281DRAFT_01888 at 0.975 kb on - strand, within H281DRAFT_01888 at 0.975 kb on - strand, within H281DRAFT_01888 at 1.237 kb on + strand, within H281DRAFT_01888 at 1.318 kb on + strand, within H281DRAFT_01888 at 1.318 kb on + strand, within H281DRAFT_01888 at 1.319 kb on - strand, within H281DRAFT_01888 at 1.366 kb on - strand, within H281DRAFT_01888 at 1.438 kb on + strand, within H281DRAFT_01888 at 1.439 kb on - strand, within H281DRAFT_01888 at 1.532 kb on - strand, within H281DRAFT_01888 at 1.532 kb on - strand, within H281DRAFT_01888 at 1.537 kb on + strand, within H281DRAFT_01888 at 1.808 kb on - strand at 1.819 kb on + strand at 1.921 kb on + strand at 1.922 kb on - strand at 2.029 kb on + strand, within H281DRAFT_01889 at 2.100 kb on - strand, within H281DRAFT_01889 at 2.221 kb on + strand, within H281DRAFT_01889 at 2.392 kb on + strand at 2.393 kb on - strand at 2.409 kb on + strand, within H281DRAFT_01889 at 2.495 kb on - strand, within H281DRAFT_01889 at 2.506 kb on - strand, within H281DRAFT_01889 at 2.548 kb on + strand at 2.548 kb on + strand at 2.549 kb on - strand at 2.591 kb on - strand at 2.591 kb on - strand at 2.668 kb on + strand at 2.668 kb on + strand at 2.669 kb on - strand at 2.669 kb on - strand at 2.862 kb on + strand, within H281DRAFT_01890 at 2.862 kb on + strand, within H281DRAFT_01890 at 2.863 kb on - strand, within H281DRAFT_01890 at 2.863 kb on - strand, within H281DRAFT_01890 at 2.987 kb on + strand, within H281DRAFT_01890 at 2.988 kb on - strand, within H281DRAFT_01890 at 2.988 kb on - strand, within H281DRAFT_01890 at 3.048 kb on + strand at 3.048 kb on + strand at 3.049 kb on - strand at 3.089 kb on + strand at 3.089 kb on + strand at 3.089 kb on + strand at 3.090 kb on - strand at 3.220 kb on + strand at 3.221 kb on - strand at 3.423 kb on - strand, within H281DRAFT_01891
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 827 - -0.1 827 - -0.4 898 - -0.4 951 - +0.7 951 - -0.2 966 + H281DRAFT_01888 0.11 -1.5 966 + H281DRAFT_01888 0.11 -0.4 966 + H281DRAFT_01888 0.11 +0.4 974 + H281DRAFT_01888 0.12 +0.3 974 + H281DRAFT_01888 0.12 -0.1 975 - H281DRAFT_01888 0.12 +0.3 975 - H281DRAFT_01888 0.12 +0.0 1,237 + H281DRAFT_01888 0.41 +0.0 1,318 + H281DRAFT_01888 0.50 +0.3 1,318 + H281DRAFT_01888 0.50 -0.1 1,319 - H281DRAFT_01888 0.50 +0.9 1,366 - H281DRAFT_01888 0.55 +0.5 1,438 + H281DRAFT_01888 0.63 +0.6 1,439 - H281DRAFT_01888 0.63 +1.5 1,532 - H281DRAFT_01888 0.73 +0.2 1,532 - H281DRAFT_01888 0.73 +0.4 1,537 + H281DRAFT_01888 0.74 +0.0 1,808 - +0.4 1,819 + +0.3 1,921 + +0.6 1,922 - +3.1 2,029 + H281DRAFT_01889 0.32 +1.2 2,100 - H281DRAFT_01889 0.40 +0.7 2,221 + H281DRAFT_01889 0.55 +1.9 2,392 + -0.7 2,393 - -0.1 2,409 + H281DRAFT_01889 0.78 +1.0 2,495 - H281DRAFT_01889 0.88 -0.9 2,506 - H281DRAFT_01889 0.89 +0.6 2,548 + +0.5 2,548 + +1.5 2,549 - +0.2 2,591 - +0.2 2,591 - +0.8 2,668 + +0.6 2,668 + -0.8 2,669 - +2.4 2,669 - +0.5 2,862 + H281DRAFT_01890 0.55 -0.0 2,862 + H281DRAFT_01890 0.55 +0.5 2,863 - H281DRAFT_01890 0.55 -0.1 2,863 - H281DRAFT_01890 0.55 +0.6 2,987 + H281DRAFT_01890 0.87 +0.6 2,988 - H281DRAFT_01890 0.88 -0.5 2,988 - H281DRAFT_01890 0.88 +1.1 3,048 + +0.4 3,048 + -0.4 3,049 - -0.1 3,089 + +0.5 3,089 + -0.9 3,089 + +0.7 3,090 - +0.8 3,220 + +0.8 3,221 - +0.3 3,423 - H281DRAFT_01891 0.21 -0.1
Or see this region's nucleotide sequence