Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01401

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01399 and H281DRAFT_01400 are separated by 221 nucleotidesH281DRAFT_01400 and H281DRAFT_01401 are separated by 94 nucleotidesH281DRAFT_01401 and H281DRAFT_01402 are separated by 60 nucleotidesH281DRAFT_01402 and H281DRAFT_01403 are separated by 72 nucleotides H281DRAFT_01399: H281DRAFT_01399 - arsenite efflux membrane protein ArsB, at 254,397 to 255,647 _01399 H281DRAFT_01400: H281DRAFT_01400 - cytochrome b561, at 255,869 to 256,429 _01400 H281DRAFT_01401: H281DRAFT_01401 - Polyisoprenoid-binding protein YceI, at 256,524 to 257,087 _01401 H281DRAFT_01402: H281DRAFT_01402 - Polyisoprenoid-binding protein YceI, at 257,148 to 257,726 _01402 H281DRAFT_01403: H281DRAFT_01403 - hypothetical protein, at 257,799 to 258,785 _01403 Position (kb) 256 257 258Strain fitness (log2 ratio) -2 -1 0 1at 255.621 kb on - strandat 255.673 kb on + strandat 255.674 kb on - strandat 255.674 kb on - strandat 255.674 kb on - strandat 255.779 kb on - strandat 255.779 kb on - strandat 255.830 kb on - strandat 255.879 kb on + strandat 255.966 kb on - strand, within H281DRAFT_01400at 256.019 kb on + strand, within H281DRAFT_01400at 256.053 kb on + strand, within H281DRAFT_01400at 256.209 kb on - strand, within H281DRAFT_01400at 256.209 kb on - strand, within H281DRAFT_01400at 256.239 kb on - strand, within H281DRAFT_01400at 256.755 kb on + strand, within H281DRAFT_01401at 256.822 kb on - strand, within H281DRAFT_01401at 257.670 kb on + strandat 258.054 kb on - strand, within H281DRAFT_01403

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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255,621 - +0.1
255,673 + -0.7
255,674 - +0.0
255,674 - -0.5
255,674 - +0.1
255,779 - +1.1
255,779 - -2.4
255,830 - -0.1
255,879 + -0.2
255,966 - H281DRAFT_01400 0.17 -1.0
256,019 + H281DRAFT_01400 0.27 -0.2
256,053 + H281DRAFT_01400 0.33 -0.5
256,209 - H281DRAFT_01400 0.61 -0.1
256,209 - H281DRAFT_01400 0.61 +0.2
256,239 - H281DRAFT_01400 0.66 -1.3
256,755 + H281DRAFT_01401 0.41 +0.5
256,822 - H281DRAFT_01401 0.53 +1.2
257,670 + +0.2
258,054 - H281DRAFT_01403 0.26 +0.2

Or see this region's nucleotide sequence