Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01230

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01229 and H281DRAFT_01230 are separated by 113 nucleotidesH281DRAFT_01230 and H281DRAFT_01231 are separated by 260 nucleotidesH281DRAFT_01231 and H281DRAFT_01232 are separated by 170 nucleotides H281DRAFT_01229: H281DRAFT_01229 - Sugar phosphate permease, at 67,127 to 68,452 _01229 H281DRAFT_01230: H281DRAFT_01230 - 3-oxoacyl-[acyl-carrier protein] reductase, at 68,566 to 69,318 _01230 H281DRAFT_01231: H281DRAFT_01231 - hypothetical protein, at 69,579 to 69,923 _01231 H281DRAFT_01232: H281DRAFT_01232 - Predicted arabinose efflux permease, MFS family, at 70,094 to 71,356 _01232 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 67.695 kb on + strand, within H281DRAFT_01229at 68.571 kb on - strandat 68.705 kb on + strand, within H281DRAFT_01230at 68.705 kb on + strand, within H281DRAFT_01230at 68.818 kb on + strand, within H281DRAFT_01230at 68.975 kb on - strand, within H281DRAFT_01230at 69.362 kb on - strandat 69.395 kb on + strandat 69.397 kb on + strandat 69.397 kb on + strandat 69.398 kb on - strandat 69.666 kb on + strand, within H281DRAFT_01231at 69.841 kb on + strand, within H281DRAFT_01231at 69.842 kb on - strand, within H281DRAFT_01231at 69.968 kb on - strandat 70.013 kb on + strandat 70.015 kb on + strandat 70.019 kb on + strandat 70.096 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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67,695 + H281DRAFT_01229 0.43 -0.2
68,571 - -1.2
68,705 + H281DRAFT_01230 0.18 -0.7
68,705 + H281DRAFT_01230 0.18 -0.8
68,818 + H281DRAFT_01230 0.33 -0.5
68,975 - H281DRAFT_01230 0.54 -0.1
69,362 - +0.7
69,395 + +0.6
69,397 + +0.4
69,397 + -0.3
69,398 - -0.5
69,666 + H281DRAFT_01231 0.25 +0.0
69,841 + H281DRAFT_01231 0.76 +0.2
69,842 - H281DRAFT_01231 0.76 -0.8
69,968 - +1.3
70,013 + +0.5
70,015 + +0.4
70,019 + -1.8
70,096 - +0.5

Or see this region's nucleotide sequence