Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00717

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00716 and H281DRAFT_00717 are separated by 269 nucleotidesH281DRAFT_00717 and H281DRAFT_00718 are separated by 231 nucleotides H281DRAFT_00716: H281DRAFT_00716 - Glycosyltransferase involved in cell wall bisynthesis, at 804,877 to 806,094 _00716 H281DRAFT_00717: H281DRAFT_00717 - HTH-type transcriptional regulator / antitoxin HigA, at 806,364 to 806,786 _00717 H281DRAFT_00718: H281DRAFT_00718 - tyrosine-protein kinase Etk/Wzc, at 807,018 to 809,429 _00718 Position (kb) 806 807Strain fitness (log2 ratio) -2 -1 0 1at 806.441 kb on + strand, within H281DRAFT_00717at 806.563 kb on + strand, within H281DRAFT_00717at 806.589 kb on - strand, within H281DRAFT_00717at 806.620 kb on + strandat 806.784 kb on + strandat 806.785 kb on - strandat 807.082 kb on + strandat 807.082 kb on + strandat 807.083 kb on - strandat 807.701 kb on - strand, within H281DRAFT_00718

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
806,441 + H281DRAFT_00717 0.18 +1.4
806,563 + H281DRAFT_00717 0.47 -2.0
806,589 - H281DRAFT_00717 0.53 +0.9
806,620 + -0.5
806,784 + +0.8
806,785 - +1.1
807,082 + -0.2
807,082 + -0.3
807,083 - +0.7
807,701 - H281DRAFT_00718 0.28 -0.3

Or see this region's nucleotide sequence