Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00528

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00527 and H281DRAFT_00528 are separated by 3 nucleotidesH281DRAFT_00528 and H281DRAFT_00529 are separated by 295 nucleotides H281DRAFT_00527: H281DRAFT_00527 - Adenylosuccinate synthetase, at 589,283 to 590,629 _00527 H281DRAFT_00528: H281DRAFT_00528 - hypothetical protein, at 590,633 to 591,223 _00528 H281DRAFT_00529: H281DRAFT_00529 - KUP system potassium uptake protein, at 591,519 to 593,405 _00529 Position (kb) 590 591 592Strain fitness (log2 ratio) -1 0 1 2at 590.628 kb on - strandat 590.712 kb on - strand, within H281DRAFT_00528at 590.828 kb on + strand, within H281DRAFT_00528at 590.829 kb on - strand, within H281DRAFT_00528at 590.912 kb on + strand, within H281DRAFT_00528at 590.912 kb on + strand, within H281DRAFT_00528at 591.102 kb on - strand, within H281DRAFT_00528at 591.241 kb on + strandat 591.335 kb on + strandat 591.336 kb on - strandat 591.336 kb on - strandat 591.368 kb on + strandat 591.396 kb on - strandat 591.396 kb on - strandat 591.406 kb on + strandat 591.407 kb on - strandat 591.527 kb on + strandat 591.528 kb on - strandat 591.528 kb on - strandat 591.553 kb on + strandat 592.094 kb on + strand, within H281DRAFT_00529at 592.138 kb on - strand, within H281DRAFT_00529at 592.165 kb on + strandat 592.177 kb on - strand, within H281DRAFT_00529

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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590,628 - +0.2
590,712 - H281DRAFT_00528 0.13 +0.3
590,828 + H281DRAFT_00528 0.33 +0.4
590,829 - H281DRAFT_00528 0.33 +1.6
590,912 + H281DRAFT_00528 0.47 -0.9
590,912 + H281DRAFT_00528 0.47 +0.1
591,102 - H281DRAFT_00528 0.79 +2.5
591,241 + +0.5
591,335 + -1.7
591,336 - +0.3
591,336 - -1.1
591,368 + +1.0
591,396 - +0.3
591,396 - -0.7
591,406 + -0.5
591,407 - +0.6
591,527 + +0.1
591,528 - +1.3
591,528 - -1.4
591,553 + +0.8
592,094 + H281DRAFT_00529 0.30 -0.4
592,138 - H281DRAFT_00529 0.33 +0.8
592,165 + +0.9
592,177 - H281DRAFT_00529 0.35 +0.0

Or see this region's nucleotide sequence