Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00138

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00137 and H281DRAFT_00138 overlap by 4 nucleotidesH281DRAFT_00138 and H281DRAFT_00139 are separated by 37 nucleotides H281DRAFT_00137: H281DRAFT_00137 - iron complex transport system permease protein, at 142,960 to 144,018 _00137 H281DRAFT_00138: H281DRAFT_00138 - iron complex transport system ATP-binding protein, at 144,015 to 144,854 _00138 H281DRAFT_00139: H281DRAFT_00139 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, at 144,892 to 145,953 _00139 Position (kb) 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 143.293 kb on + strand, within H281DRAFT_00137at 143.293 kb on + strand, within H281DRAFT_00137at 143.294 kb on - strand, within H281DRAFT_00137at 143.294 kb on - strand, within H281DRAFT_00137at 143.297 kb on + strand, within H281DRAFT_00137at 143.298 kb on - strand, within H281DRAFT_00137at 143.300 kb on + strand, within H281DRAFT_00137at 143.743 kb on + strand, within H281DRAFT_00137at 143.823 kb on + strand, within H281DRAFT_00137at 143.823 kb on + strandat 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.856 kb on + strand, within H281DRAFT_00137at 143.857 kb on - strand, within H281DRAFT_00137at 143.898 kb on - strand, within H281DRAFT_00137at 144.236 kb on + strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.237 kb on - strand, within H281DRAFT_00138at 144.436 kb on + strand, within H281DRAFT_00138at 144.718 kb on + strand, within H281DRAFT_00138at 144.719 kb on - strand, within H281DRAFT_00138at 144.877 kb on - strandat 144.930 kb on - strandat 144.951 kb on - strandat 145.054 kb on - strand, within H281DRAFT_00139at 145.054 kb on - strand, within H281DRAFT_00139at 145.281 kb on + strand, within H281DRAFT_00139at 145.747 kb on + strand, within H281DRAFT_00139at 145.747 kb on + strandat 145.748 kb on - strand, within H281DRAFT_00139at 145.801 kb on + strand, within H281DRAFT_00139at 145.824 kb on - strand, within H281DRAFT_00139

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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143,293 + H281DRAFT_00137 0.31 -1.0
143,293 + H281DRAFT_00137 0.31 +0.5
143,294 - H281DRAFT_00137 0.32 -0.8
143,294 - H281DRAFT_00137 0.32 +0.2
143,297 + H281DRAFT_00137 0.32 +0.3
143,298 - H281DRAFT_00137 0.32 -0.1
143,300 + H281DRAFT_00137 0.32 -0.5
143,743 + H281DRAFT_00137 0.74 -0.8
143,823 + H281DRAFT_00137 0.81 +0.9
143,823 + +2.7
143,856 + H281DRAFT_00137 0.85 -0.3
143,856 + H281DRAFT_00137 0.85 +0.4
143,856 + H281DRAFT_00137 0.85 +0.4
143,856 + H281DRAFT_00137 0.85 -0.2
143,856 + H281DRAFT_00137 0.85 +0.3
143,857 - H281DRAFT_00137 0.85 -0.1
143,898 - H281DRAFT_00137 0.89 -1.0
144,236 + H281DRAFT_00138 0.26 +0.8
144,237 - H281DRAFT_00138 0.26 -1.1
144,237 - H281DRAFT_00138 0.26 -0.6
144,237 - H281DRAFT_00138 0.26 -1.4
144,237 - H281DRAFT_00138 0.26 -2.1
144,237 - H281DRAFT_00138 0.26 -1.6
144,436 + H281DRAFT_00138 0.50 +0.1
144,718 + H281DRAFT_00138 0.84 -0.0
144,719 - H281DRAFT_00138 0.84 -0.4
144,877 - +0.7
144,930 - -0.4
144,951 - -2.0
145,054 - H281DRAFT_00139 0.15 -1.6
145,054 - H281DRAFT_00139 0.15 -2.3
145,281 + H281DRAFT_00139 0.37 -2.3
145,747 + H281DRAFT_00139 0.81 -0.7
145,747 + +0.5
145,748 - H281DRAFT_00139 0.81 -0.8
145,801 + H281DRAFT_00139 0.86 -2.9
145,824 - H281DRAFT_00139 0.88 +0.2

Or see this region's nucleotide sequence