Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00102

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00100 and H281DRAFT_00101 are separated by 11 nucleotidesH281DRAFT_00101 and H281DRAFT_00102 are separated by 59 nucleotidesH281DRAFT_00102 and H281DRAFT_00103 are separated by 348 nucleotides H281DRAFT_00100: H281DRAFT_00100 - outer membrane protein, at 104,299 to 105,849 _00100 H281DRAFT_00101: H281DRAFT_00101 - Rhodanese-related sulfurtransferase, at 105,861 to 106,184 _00101 H281DRAFT_00102: H281DRAFT_00102 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 106,244 to 106,897 _00102 H281DRAFT_00103: H281DRAFT_00103 - transcriptional regulator, LacI family, at 107,246 to 108,334 _00103 Position (kb) 106 107Strain fitness (log2 ratio) -2 -1 0 1 2at 105.272 kb on + strand, within H281DRAFT_00100at 105.272 kb on + strand, within H281DRAFT_00100at 105.510 kb on - strand, within H281DRAFT_00100at 105.555 kb on - strand, within H281DRAFT_00100at 105.555 kb on - strand, within H281DRAFT_00100at 105.560 kb on + strand, within H281DRAFT_00100at 105.560 kb on + strand, within H281DRAFT_00100at 105.560 kb on + strand, within H281DRAFT_00100at 105.560 kb on + strandat 105.561 kb on - strand, within H281DRAFT_00100at 105.561 kb on - strand, within H281DRAFT_00100at 105.740 kb on + strandat 105.865 kb on + strandat 105.865 kb on + strandat 105.866 kb on - strandat 106.468 kb on - strand, within H281DRAFT_00102at 106.630 kb on - strand, within H281DRAFT_00102at 107.028 kb on - strandat 107.028 kb on - strandat 107.165 kb on - strandat 107.804 kb on + strand, within H281DRAFT_00103at 107.804 kb on + strand, within H281DRAFT_00103at 107.804 kb on + strand, within H281DRAFT_00103at 107.804 kb on + strand, within H281DRAFT_00103at 107.805 kb on - strand, within H281DRAFT_00103

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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105,272 + H281DRAFT_00100 0.63 +0.3
105,272 + H281DRAFT_00100 0.63 +0.2
105,510 - H281DRAFT_00100 0.78 -0.8
105,555 - H281DRAFT_00100 0.81 -0.4
105,555 - H281DRAFT_00100 0.81 +0.4
105,560 + H281DRAFT_00100 0.81 +0.1
105,560 + H281DRAFT_00100 0.81 +0.8
105,560 + H281DRAFT_00100 0.81 -0.9
105,560 + -0.5
105,561 - H281DRAFT_00100 0.81 +0.9
105,561 - H281DRAFT_00100 0.81 +0.4
105,740 + +0.2
105,865 + +1.8
105,865 + -0.6
105,866 - +1.6
106,468 - H281DRAFT_00102 0.34 -0.8
106,630 - H281DRAFT_00102 0.59 +1.7
107,028 - -0.3
107,028 - -0.4
107,165 - -0.1
107,804 + H281DRAFT_00103 0.51 -2.1
107,804 + H281DRAFT_00103 0.51 +0.3
107,804 + H281DRAFT_00103 0.51 +0.6
107,804 + H281DRAFT_00103 0.51 -0.4
107,805 - H281DRAFT_00103 0.51 -0.3

Or see this region's nucleotide sequence