Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00261

Experiment: PYE_noCalcium 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00260 and CCNA_00261 are separated by 136 nucleotidesCCNA_00261 and CCNA_00262 are separated by 182 nucleotides CCNA_00260: CCNA_00260 - glutathione S-transferase, at 272,872 to 273,558 _00260 CCNA_00261: CCNA_00261 - ribonucleoside-diphosphate reductase beta chain, at 273,695 to 274,738 _00261 CCNA_00262: CCNA_00262 - ketopantoate reductase panE/ApbA family protein, at 274,921 to 275,793 _00262 Position (kb) 273 274 275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 272.749 kb on - strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.758 kb on + strandat 272.764 kb on + strandat 272.764 kb on + strandat 272.766 kb on - strandat 272.766 kb on - strandat 272.767 kb on - strandat 272.772 kb on - strandat 272.800 kb on + strandat 272.812 kb on - strandat 272.813 kb on - strandat 272.855 kb on - strandat 272.870 kb on - strandat 272.876 kb on - strandat 272.932 kb on - strandat 272.932 kb on - strandat 272.990 kb on + strand, within CCNA_00260at 272.993 kb on + strand, within CCNA_00260at 272.993 kb on + strand, within CCNA_00260at 273.018 kb on - strand, within CCNA_00260at 273.025 kb on + strand, within CCNA_00260at 273.035 kb on - strand, within CCNA_00260at 273.046 kb on - strand, within CCNA_00260at 273.058 kb on - strand, within CCNA_00260at 273.094 kb on + strand, within CCNA_00260at 273.136 kb on - strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.161 kb on + strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.169 kb on - strand, within CCNA_00260at 273.173 kb on + strand, within CCNA_00260at 273.180 kb on + strand, within CCNA_00260at 273.196 kb on + strand, within CCNA_00260at 273.196 kb on + strand, within CCNA_00260at 273.196 kb on + strand, within CCNA_00260at 273.199 kb on - strand, within CCNA_00260at 273.204 kb on - strand, within CCNA_00260at 273.204 kb on - strand, within CCNA_00260at 273.209 kb on - strand, within CCNA_00260at 273.217 kb on - strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.221 kb on + strand, within CCNA_00260at 273.222 kb on + strand, within CCNA_00260at 273.229 kb on - strand, within CCNA_00260at 273.246 kb on - strand, within CCNA_00260at 273.257 kb on - strand, within CCNA_00260at 273.278 kb on - strand, within CCNA_00260at 273.291 kb on - strand, within CCNA_00260at 273.293 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.348 kb on - strand, within CCNA_00260at 273.366 kb on + strand, within CCNA_00260at 273.380 kb on + strand, within CCNA_00260at 273.380 kb on + strand, within CCNA_00260at 273.398 kb on - strand, within CCNA_00260at 273.419 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.425 kb on + strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.433 kb on - strand, within CCNA_00260at 273.435 kb on + strand, within CCNA_00260at 273.463 kb on - strand, within CCNA_00260at 273.481 kb on - strand, within CCNA_00260at 273.487 kb on + strand, within CCNA_00260at 273.493 kb on + strandat 273.495 kb on - strandat 273.533 kb on + strandat 273.541 kb on - strandat 273.546 kb on - strandat 273.593 kb on + strandat 273.605 kb on + strandat 273.647 kb on + strandat 273.654 kb on + strandat 273.692 kb on + strandat 273.692 kb on + strandat 273.692 kb on + strandat 274.749 kb on + strandat 274.782 kb on + strandat 274.799 kb on + strandat 274.813 kb on + strandat 274.814 kb on - strandat 274.821 kb on - strandat 274.821 kb on - strandat 274.844 kb on + strandat 274.867 kb on - strandat 274.867 kb on - strandat 274.889 kb on + strandat 274.889 kb on + strandat 274.889 kb on + strandat 274.889 kb on + strandat 274.896 kb on - strandat 274.910 kb on - strandat 274.920 kb on - strandat 274.920 kb on - strandat 274.941 kb on - strandat 274.965 kb on - strandat 275.025 kb on + strand, within CCNA_00262at 275.074 kb on - strand, within CCNA_00262at 275.115 kb on - strand, within CCNA_00262at 275.122 kb on - strand, within CCNA_00262at 275.139 kb on - strand, within CCNA_00262at 275.139 kb on - strand, within CCNA_00262at 275.139 kb on - strand, within CCNA_00262at 275.145 kb on - strand, within CCNA_00262at 275.155 kb on + strand, within CCNA_00262at 275.155 kb on + strand, within CCNA_00262at 275.155 kb on + strand, within CCNA_00262at 275.155 kb on + strand, within CCNA_00262at 275.163 kb on - strand, within CCNA_00262at 275.185 kb on + strand, within CCNA_00262at 275.193 kb on - strand, within CCNA_00262at 275.193 kb on - strand, within CCNA_00262at 275.198 kb on + strand, within CCNA_00262at 275.273 kb on - strand, within CCNA_00262at 275.283 kb on - strand, within CCNA_00262at 275.372 kb on + strand, within CCNA_00262at 275.385 kb on - strand, within CCNA_00262at 275.403 kb on - strand, within CCNA_00262at 275.409 kb on - strand, within CCNA_00262at 275.409 kb on - strand, within CCNA_00262at 275.411 kb on - strand, within CCNA_00262at 275.434 kb on + strand, within CCNA_00262at 275.446 kb on - strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.449 kb on + strand, within CCNA_00262at 275.454 kb on + strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.457 kb on - strand, within CCNA_00262at 275.459 kb on + strand, within CCNA_00262at 275.467 kb on - strand, within CCNA_00262at 275.467 kb on - strand, within CCNA_00262at 275.484 kb on + strand, within CCNA_00262at 275.484 kb on + strand, within CCNA_00262at 275.492 kb on - strand, within CCNA_00262at 275.492 kb on - strand, within CCNA_00262at 275.504 kb on + strand, within CCNA_00262at 275.504 kb on + strand, within CCNA_00262at 275.521 kb on + strand, within CCNA_00262at 275.521 kb on + strand, within CCNA_00262at 275.534 kb on - strand, within CCNA_00262at 275.550 kb on - strand, within CCNA_00262at 275.558 kb on - strand, within CCNA_00262at 275.568 kb on + strand, within CCNA_00262at 275.576 kb on - strand, within CCNA_00262at 275.615 kb on - strand, within CCNA_00262at 275.615 kb on - strand, within CCNA_00262at 275.615 kb on - strand, within CCNA_00262at 275.681 kb on - strand, within CCNA_00262at 275.686 kb on + strand, within CCNA_00262

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 4C survival rep1 58 days
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272,749 - +0.6
272,758 + -0.8
272,758 + +0.6
272,758 + +0.4
272,764 + +0.1
272,764 + -0.2
272,766 - -1.5
272,766 - -1.8
272,767 - +0.3
272,772 - -1.9
272,800 + +1.3
272,812 - -1.2
272,813 - -1.3
272,855 - +1.0
272,870 - -3.1
272,876 - -0.5
272,932 - -2.5
272,932 - -0.3
272,990 + CCNA_00260 0.17 -1.6
272,993 + CCNA_00260 0.18 -0.8
272,993 + CCNA_00260 0.18 -1.8
273,018 - CCNA_00260 0.21 -1.2
273,025 + CCNA_00260 0.22 -0.4
273,035 - CCNA_00260 0.24 +1.9
273,046 - CCNA_00260 0.25 -0.1
273,058 - CCNA_00260 0.27 -0.0
273,094 + CCNA_00260 0.32 +0.5
273,136 - CCNA_00260 0.38 -3.7
273,161 + CCNA_00260 0.42 -0.9
273,161 + CCNA_00260 0.42 -0.4
273,169 - CCNA_00260 0.43 -1.1
273,169 - CCNA_00260 0.43 -0.0
273,169 - CCNA_00260 0.43 +1.3
273,169 - CCNA_00260 0.43 +0.5
273,173 + CCNA_00260 0.44 -0.0
273,180 + CCNA_00260 0.45 +1.0
273,196 + CCNA_00260 0.47 +0.2
273,196 + CCNA_00260 0.47 +1.5
273,196 + CCNA_00260 0.47 -1.1
273,199 - CCNA_00260 0.48 -0.0
273,204 - CCNA_00260 0.48 -0.1
273,204 - CCNA_00260 0.48 -0.2
273,209 - CCNA_00260 0.49 -0.1
273,217 - CCNA_00260 0.50 +3.1
273,221 + CCNA_00260 0.51 -0.2
273,221 + CCNA_00260 0.51 +3.9
273,221 + CCNA_00260 0.51 -1.3
273,222 + CCNA_00260 0.51 -2.0
273,229 - CCNA_00260 0.52 -2.4
273,246 - CCNA_00260 0.54 +0.5
273,257 - CCNA_00260 0.56 +1.2
273,278 - CCNA_00260 0.59 +3.5
273,291 - CCNA_00260 0.61 -0.3
273,293 - CCNA_00260 0.61 +0.5
273,348 - CCNA_00260 0.69 +0.0
273,348 - CCNA_00260 0.69 -1.3
273,348 - CCNA_00260 0.69 +0.7
273,366 + CCNA_00260 0.72 -0.0
273,380 + CCNA_00260 0.74 +2.5
273,380 + CCNA_00260 0.74 -2.3
273,398 - CCNA_00260 0.77 -0.9
273,419 + CCNA_00260 0.80 +0.9
273,425 + CCNA_00260 0.80 +3.3
273,425 + CCNA_00260 0.80 -1.7
273,425 + CCNA_00260 0.80 -0.5
273,425 + CCNA_00260 0.80 -1.6
273,425 + CCNA_00260 0.80 -2.3
273,425 + CCNA_00260 0.80 -1.8
273,425 + CCNA_00260 0.80 -0.2
273,433 - CCNA_00260 0.82 -2.9
273,433 - CCNA_00260 0.82 -2.0
273,433 - CCNA_00260 0.82 -1.1
273,433 - CCNA_00260 0.82 +0.1
273,433 - CCNA_00260 0.82 -1.0
273,433 - CCNA_00260 0.82 -0.1
273,433 - CCNA_00260 0.82 -0.1
273,433 - CCNA_00260 0.82 -0.1
273,435 + CCNA_00260 0.82 -1.2
273,463 - CCNA_00260 0.86 -0.8
273,481 - CCNA_00260 0.89 -2.0
273,487 + CCNA_00260 0.90 -1.2
273,493 + +0.2
273,495 - +0.4
273,533 + -4.5
273,541 - +0.8
273,546 - +0.2
273,593 + -0.5
273,605 + -1.0
273,647 + +1.3
273,654 + -0.0
273,692 + -0.9
273,692 + -1.5
273,692 + -3.7
274,749 + +0.8
274,782 + +1.1
274,799 + +0.8
274,813 + +0.5
274,814 - -0.0
274,821 - -0.5
274,821 - -0.2
274,844 + +1.4
274,867 - -0.4
274,867 - +1.0
274,889 + +0.2
274,889 + -0.6
274,889 + +1.4
274,889 + +1.1
274,896 - -0.7
274,910 - -1.7
274,920 - +0.5
274,920 - +0.3
274,941 - -0.2
274,965 - +1.5
275,025 + CCNA_00262 0.12 +0.0
275,074 - CCNA_00262 0.18 -0.9
275,115 - CCNA_00262 0.22 +0.5
275,122 - CCNA_00262 0.23 -0.5
275,139 - CCNA_00262 0.25 -3.3
275,139 - CCNA_00262 0.25 +1.2
275,139 - CCNA_00262 0.25 +0.3
275,145 - CCNA_00262 0.26 +0.8
275,155 + CCNA_00262 0.27 +1.1
275,155 + CCNA_00262 0.27 -0.1
275,155 + CCNA_00262 0.27 -1.6
275,155 + CCNA_00262 0.27 +0.3
275,163 - CCNA_00262 0.28 +1.7
275,185 + CCNA_00262 0.30 +1.1
275,193 - CCNA_00262 0.31 -0.4
275,193 - CCNA_00262 0.31 +0.5
275,198 + CCNA_00262 0.32 +0.4
275,273 - CCNA_00262 0.40 -0.9
275,283 - CCNA_00262 0.41 +0.2
275,372 + CCNA_00262 0.52 +0.2
275,385 - CCNA_00262 0.53 -0.8
275,403 - CCNA_00262 0.55 +1.0
275,409 - CCNA_00262 0.56 -0.4
275,409 - CCNA_00262 0.56 -1.0
275,411 - CCNA_00262 0.56 -1.0
275,434 + CCNA_00262 0.59 -0.8
275,446 - CCNA_00262 0.60 -0.4
275,449 + CCNA_00262 0.60 -1.1
275,449 + CCNA_00262 0.60 +0.4
275,449 + CCNA_00262 0.60 -0.1
275,449 + CCNA_00262 0.60 +3.1
275,454 + CCNA_00262 0.61 +0.4
275,457 - CCNA_00262 0.61 -0.8
275,457 - CCNA_00262 0.61 -1.5
275,457 - CCNA_00262 0.61 +0.2
275,457 - CCNA_00262 0.61 -1.6
275,457 - CCNA_00262 0.61 -1.4
275,459 + CCNA_00262 0.62 +0.3
275,467 - CCNA_00262 0.63 +0.4
275,467 - CCNA_00262 0.63 +1.0
275,484 + CCNA_00262 0.64 +1.2
275,484 + CCNA_00262 0.64 -1.3
275,492 - CCNA_00262 0.65 -0.4
275,492 - CCNA_00262 0.65 +0.5
275,504 + CCNA_00262 0.67 -0.6
275,504 + CCNA_00262 0.67 -0.2
275,521 + CCNA_00262 0.69 -0.4
275,521 + CCNA_00262 0.69 -0.5
275,534 - CCNA_00262 0.70 -1.4
275,550 - CCNA_00262 0.72 +0.6
275,558 - CCNA_00262 0.73 -0.5
275,568 + CCNA_00262 0.74 -1.7
275,576 - CCNA_00262 0.75 -0.3
275,615 - CCNA_00262 0.79 +0.1
275,615 - CCNA_00262 0.79 -0.6
275,615 - CCNA_00262 0.79 -0.6
275,681 - CCNA_00262 0.87 +0.3
275,686 + CCNA_00262 0.88 +1.0

Or see this region's nucleotide sequence