Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00139

Experiment: PYE_noCalcium 4C survival rep1 58 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00138 and CCNA_00139 are separated by 48 nucleotidesCCNA_00139 and CCNA_00140 are separated by 108 nucleotides CCNA_00138: CCNA_00138 - TonB-dependent receptor, at 148,752 to 150,944 _00138 CCNA_00139: CCNA_00139 - magnesium chelatase subunit ChlI-like ATPase, at 150,993 to 152,600 _00139 CCNA_00140: CCNA_00140 - glutathione synthetase, at 152,709 to 153,662 _00140 Position (kb) 150 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 150.002 kb on + strand, within CCNA_00138at 150.017 kb on - strandat 150.034 kb on + strand, within CCNA_00138at 150.034 kb on + strand, within CCNA_00138at 150.038 kb on + strand, within CCNA_00138at 150.042 kb on - strand, within CCNA_00138at 150.089 kb on + strand, within CCNA_00138at 150.097 kb on + strand, within CCNA_00138at 150.120 kb on - strand, within CCNA_00138at 150.150 kb on - strand, within CCNA_00138at 150.165 kb on + strand, within CCNA_00138at 150.165 kb on + strand, within CCNA_00138at 150.173 kb on - strand, within CCNA_00138at 150.178 kb on - strand, within CCNA_00138at 150.184 kb on + strand, within CCNA_00138at 150.193 kb on - strand, within CCNA_00138at 150.197 kb on + strand, within CCNA_00138at 150.205 kb on - strand, within CCNA_00138at 150.213 kb on + strand, within CCNA_00138at 150.227 kb on - strand, within CCNA_00138at 150.265 kb on + strand, within CCNA_00138at 150.269 kb on + strand, within CCNA_00138at 150.282 kb on + strand, within CCNA_00138at 150.283 kb on - strand, within CCNA_00138at 150.299 kb on - strand, within CCNA_00138at 150.332 kb on - strand, within CCNA_00138at 150.347 kb on + strand, within CCNA_00138at 150.355 kb on - strand, within CCNA_00138at 150.355 kb on - strand, within CCNA_00138at 150.417 kb on + strand, within CCNA_00138at 150.417 kb on + strand, within CCNA_00138at 150.417 kb on + strand, within CCNA_00138at 150.420 kb on - strand, within CCNA_00138at 150.425 kb on - strand, within CCNA_00138at 150.439 kb on + strand, within CCNA_00138at 150.439 kb on + strand, within CCNA_00138at 150.450 kb on + strand, within CCNA_00138at 150.471 kb on - strand, within CCNA_00138at 150.497 kb on - strand, within CCNA_00138at 150.502 kb on - strand, within CCNA_00138at 150.525 kb on + strand, within CCNA_00138at 150.525 kb on + strand, within CCNA_00138at 150.533 kb on - strand, within CCNA_00138at 150.533 kb on - strand, within CCNA_00138at 150.568 kb on + strand, within CCNA_00138at 150.576 kb on - strand, within CCNA_00138at 150.582 kb on - strand, within CCNA_00138at 150.591 kb on - strand, within CCNA_00138at 150.612 kb on + strand, within CCNA_00138at 150.612 kb on + strand, within CCNA_00138at 150.669 kb on - strand, within CCNA_00138at 150.685 kb on + strand, within CCNA_00138at 150.711 kb on - strand, within CCNA_00138at 150.718 kb on + strand, within CCNA_00138at 150.723 kb on + strand, within CCNA_00138at 150.726 kb on - strandat 150.731 kb on - strandat 150.736 kb on - strandat 150.828 kb on + strandat 150.828 kb on + strandat 150.828 kb on + strandat 150.833 kb on + strandat 150.833 kb on + strandat 150.841 kb on - strandat 150.841 kb on - strandat 150.841 kb on - strandat 150.841 kb on - strandat 150.871 kb on - strandat 150.874 kb on - strandat 150.889 kb on + strandat 150.889 kb on + strandat 150.889 kb on + strandat 150.897 kb on - strandat 150.922 kb on - strandat 151.099 kb on - strandat 151.113 kb on + strandat 151.113 kb on + strandat 151.127 kb on - strandat 151.156 kb on + strand, within CCNA_00139at 151.156 kb on + strand, within CCNA_00139at 151.164 kb on - strand, within CCNA_00139at 151.201 kb on - strand, within CCNA_00139at 151.227 kb on - strand, within CCNA_00139at 151.234 kb on + strand, within CCNA_00139at 151.247 kb on - strand, within CCNA_00139at 151.247 kb on - strand, within CCNA_00139at 151.258 kb on + strand, within CCNA_00139at 151.308 kb on + strand, within CCNA_00139at 151.308 kb on + strand, within CCNA_00139at 151.316 kb on - strand, within CCNA_00139at 151.316 kb on - strand, within CCNA_00139at 151.357 kb on + strand, within CCNA_00139at 151.357 kb on + strand, within CCNA_00139at 151.365 kb on - strand, within CCNA_00139at 151.365 kb on - strand, within CCNA_00139at 151.370 kb on - strand, within CCNA_00139at 151.403 kb on - strand, within CCNA_00139at 151.490 kb on + strand, within CCNA_00139at 151.492 kb on + strand, within CCNA_00139at 151.584 kb on + strand, within CCNA_00139at 151.585 kb on + strand, within CCNA_00139at 151.590 kb on - strand, within CCNA_00139at 151.600 kb on + strand, within CCNA_00139at 151.630 kb on + strand, within CCNA_00139at 151.630 kb on + strand, within CCNA_00139at 151.657 kb on - strand, within CCNA_00139at 151.668 kb on + strand, within CCNA_00139at 151.668 kb on + strand, within CCNA_00139at 151.676 kb on - strand, within CCNA_00139at 151.702 kb on + strand, within CCNA_00139at 151.749 kb on + strand, within CCNA_00139at 151.753 kb on - strand, within CCNA_00139at 151.762 kb on + strand, within CCNA_00139at 151.770 kb on - strand, within CCNA_00139at 151.772 kb on + strand, within CCNA_00139at 151.775 kb on - strand, within CCNA_00139at 151.781 kb on + strand, within CCNA_00139at 151.799 kb on - strand, within CCNA_00139at 151.845 kb on - strand, within CCNA_00139at 151.870 kb on + strand, within CCNA_00139at 151.872 kb on + strand, within CCNA_00139at 151.878 kb on - strand, within CCNA_00139at 151.890 kb on + strand, within CCNA_00139at 151.898 kb on - strand, within CCNA_00139at 151.898 kb on - strand, within CCNA_00139at 151.901 kb on + strand, within CCNA_00139at 151.912 kb on + strand, within CCNA_00139at 151.936 kb on - strand, within CCNA_00139at 151.936 kb on - strand, within CCNA_00139at 151.962 kb on - strand, within CCNA_00139at 151.967 kb on - strand, within CCNA_00139at 151.967 kb on - strand, within CCNA_00139at 151.967 kb on - strand, within CCNA_00139at 152.013 kb on + strand, within CCNA_00139at 152.016 kb on - strand, within CCNA_00139at 152.036 kb on + strand, within CCNA_00139at 152.040 kb on - strand, within CCNA_00139at 152.048 kb on - strand, within CCNA_00139at 152.078 kb on + strand, within CCNA_00139at 152.088 kb on + strand, within CCNA_00139at 152.128 kb on - strand, within CCNA_00139at 152.165 kb on - strand, within CCNA_00139at 152.165 kb on - strand, within CCNA_00139at 152.166 kb on - strand, within CCNA_00139at 152.188 kb on + strand, within CCNA_00139at 152.193 kb on + strand, within CCNA_00139at 152.196 kb on - strand, within CCNA_00139at 152.201 kb on - strand, within CCNA_00139at 152.201 kb on - strand, within CCNA_00139at 152.213 kb on - strand, within CCNA_00139at 152.266 kb on + strand, within CCNA_00139at 152.274 kb on - strand, within CCNA_00139at 152.274 kb on - strand, within CCNA_00139at 152.305 kb on - strand, within CCNA_00139at 152.329 kb on - strand, within CCNA_00139at 152.366 kb on - strand, within CCNA_00139at 152.382 kb on - strand, within CCNA_00139at 152.441 kb on - strandat 152.532 kb on - strandat 152.537 kb on - strandat 152.574 kb on - strandat 152.615 kb on - strandat 152.626 kb on - strandat 152.716 kb on - strandat 152.716 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 4C survival rep1 58 days
remove
150,002 + CCNA_00138 0.57 +0.0
150,017 - -2.2
150,034 + CCNA_00138 0.58 +0.7
150,034 + CCNA_00138 0.58 -1.0
150,038 + CCNA_00138 0.59 +0.5
150,042 - CCNA_00138 0.59 -0.2
150,089 + CCNA_00138 0.61 +0.4
150,097 + CCNA_00138 0.61 -1.3
150,120 - CCNA_00138 0.62 -1.6
150,150 - CCNA_00138 0.64 -0.3
150,165 + CCNA_00138 0.64 +1.6
150,165 + CCNA_00138 0.64 -1.1
150,173 - CCNA_00138 0.65 +0.3
150,178 - CCNA_00138 0.65 +0.1
150,184 + CCNA_00138 0.65 +0.3
150,193 - CCNA_00138 0.66 -1.0
150,197 + CCNA_00138 0.66 -0.8
150,205 - CCNA_00138 0.66 -0.0
150,213 + CCNA_00138 0.67 -0.2
150,227 - CCNA_00138 0.67 -1.9
150,265 + CCNA_00138 0.69 +0.5
150,269 + CCNA_00138 0.69 +0.3
150,282 + CCNA_00138 0.70 +0.2
150,283 - CCNA_00138 0.70 -2.0
150,299 - CCNA_00138 0.71 -2.0
150,332 - CCNA_00138 0.72 -1.3
150,347 + CCNA_00138 0.73 +1.2
150,355 - CCNA_00138 0.73 +1.1
150,355 - CCNA_00138 0.73 +0.3
150,417 + CCNA_00138 0.76 +0.2
150,417 + CCNA_00138 0.76 +0.2
150,417 + CCNA_00138 0.76 -0.8
150,420 - CCNA_00138 0.76 -2.9
150,425 - CCNA_00138 0.76 -0.1
150,439 + CCNA_00138 0.77 +1.0
150,439 + CCNA_00138 0.77 +0.0
150,450 + CCNA_00138 0.77 +0.1
150,471 - CCNA_00138 0.78 -0.8
150,497 - CCNA_00138 0.80 -0.8
150,502 - CCNA_00138 0.80 -2.1
150,525 + CCNA_00138 0.81 +0.2
150,525 + CCNA_00138 0.81 +1.7
150,533 - CCNA_00138 0.81 -0.2
150,533 - CCNA_00138 0.81 -1.1
150,568 + CCNA_00138 0.83 +0.0
150,576 - CCNA_00138 0.83 -1.4
150,582 - CCNA_00138 0.83 -0.4
150,591 - CCNA_00138 0.84 -2.0
150,612 + CCNA_00138 0.85 -1.1
150,612 + CCNA_00138 0.85 +0.3
150,669 - CCNA_00138 0.87 -1.4
150,685 + CCNA_00138 0.88 +0.0
150,711 - CCNA_00138 0.89 -0.8
150,718 + CCNA_00138 0.90 -1.1
150,723 + CCNA_00138 0.90 +0.5
150,726 - -0.5
150,731 - -2.6
150,736 - -1.7
150,828 + -0.9
150,828 + +0.1
150,828 + -0.3
150,833 + -2.0
150,833 + -3.5
150,841 - +0.5
150,841 - +0.6
150,841 - -0.5
150,841 - +0.5
150,871 - -3.5
150,874 - -1.0
150,889 + +0.4
150,889 + -0.2
150,889 + +0.6
150,897 - -1.9
150,922 - -0.6
151,099 - +0.8
151,113 + +0.5
151,113 + +1.2
151,127 - +0.5
151,156 + CCNA_00139 0.10 +0.9
151,156 + CCNA_00139 0.10 +0.6
151,164 - CCNA_00139 0.11 -0.3
151,201 - CCNA_00139 0.13 +0.2
151,227 - CCNA_00139 0.15 -0.0
151,234 + CCNA_00139 0.15 +0.0
151,247 - CCNA_00139 0.16 -0.3
151,247 - CCNA_00139 0.16 +2.0
151,258 + CCNA_00139 0.16 +0.0
151,308 + CCNA_00139 0.20 +0.0
151,308 + CCNA_00139 0.20 -0.5
151,316 - CCNA_00139 0.20 -0.7
151,316 - CCNA_00139 0.20 -0.4
151,357 + CCNA_00139 0.23 +0.3
151,357 + CCNA_00139 0.23 -1.0
151,365 - CCNA_00139 0.23 +0.4
151,365 - CCNA_00139 0.23 -2.1
151,370 - CCNA_00139 0.23 -1.2
151,403 - CCNA_00139 0.25 -0.3
151,490 + CCNA_00139 0.31 +1.3
151,492 + CCNA_00139 0.31 +0.8
151,584 + CCNA_00139 0.37 -0.7
151,585 + CCNA_00139 0.37 +0.7
151,590 - CCNA_00139 0.37 +0.9
151,600 + CCNA_00139 0.38 -0.0
151,630 + CCNA_00139 0.40 -2.2
151,630 + CCNA_00139 0.40 -0.6
151,657 - CCNA_00139 0.41 +1.1
151,668 + CCNA_00139 0.42 -0.2
151,668 + CCNA_00139 0.42 -1.7
151,676 - CCNA_00139 0.42 +1.0
151,702 + CCNA_00139 0.44 -3.6
151,749 + CCNA_00139 0.47 -0.9
151,753 - CCNA_00139 0.47 +1.6
151,762 + CCNA_00139 0.48 -0.6
151,770 - CCNA_00139 0.48 +0.5
151,772 + CCNA_00139 0.48 +0.3
151,775 - CCNA_00139 0.49 +0.4
151,781 + CCNA_00139 0.49 -0.0
151,799 - CCNA_00139 0.50 -0.9
151,845 - CCNA_00139 0.53 -0.8
151,870 + CCNA_00139 0.55 -2.2
151,872 + CCNA_00139 0.55 -0.4
151,878 - CCNA_00139 0.55 -0.2
151,890 + CCNA_00139 0.56 -1.2
151,898 - CCNA_00139 0.56 +0.4
151,898 - CCNA_00139 0.56 +0.8
151,901 + CCNA_00139 0.56 +0.3
151,912 + CCNA_00139 0.57 -1.3
151,936 - CCNA_00139 0.59 +0.3
151,936 - CCNA_00139 0.59 -1.0
151,962 - CCNA_00139 0.60 -0.4
151,967 - CCNA_00139 0.61 +0.7
151,967 - CCNA_00139 0.61 -0.7
151,967 - CCNA_00139 0.61 +0.3
152,013 + CCNA_00139 0.63 -2.1
152,016 - CCNA_00139 0.64 +1.5
152,036 + CCNA_00139 0.65 +0.6
152,040 - CCNA_00139 0.65 -1.8
152,048 - CCNA_00139 0.66 +0.6
152,078 + CCNA_00139 0.67 +1.7
152,088 + CCNA_00139 0.68 -0.4
152,128 - CCNA_00139 0.71 +0.1
152,165 - CCNA_00139 0.73 +0.7
152,165 - CCNA_00139 0.73 +0.2
152,166 - CCNA_00139 0.73 -1.3
152,188 + CCNA_00139 0.74 -2.2
152,193 + CCNA_00139 0.75 +0.4
152,196 - CCNA_00139 0.75 -1.0
152,201 - CCNA_00139 0.75 -0.8
152,201 - CCNA_00139 0.75 +0.1
152,213 - CCNA_00139 0.76 +1.2
152,266 + CCNA_00139 0.79 +0.3
152,274 - CCNA_00139 0.80 -1.2
152,274 - CCNA_00139 0.80 -0.1
152,305 - CCNA_00139 0.82 +1.0
152,329 - CCNA_00139 0.83 +0.0
152,366 - CCNA_00139 0.85 +1.1
152,382 - CCNA_00139 0.86 +1.0
152,441 - -0.2
152,532 - +0.6
152,537 - +1.6
152,574 - -0.8
152,615 - +1.1
152,626 - +1.4
152,716 - -2.6
152,716 - +1.0

Or see this region's nucleotide sequence