Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00056

Experiment: PYE_noCalcium 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00054 and CCNA_00055 are separated by 189 nucleotidesCCNA_00055 and CCNA_00056 are separated by 45 nucleotidesCCNA_00056 and CCNA_00057 are separated by 8 nucleotidesCCNA_00057 and CCNA_00058 are separated by 3 nucleotides CCNA_00054: CCNA_00054 - tRNA 2-methylthioadenosine synthase, at 56,665 to 58,011 _00054 CCNA_00055: CCNA_00055 - ferric uptake regulation protein, at 58,201 to 58,608 _00055 CCNA_00056: CCNA_00056 - ribosomal-protein-S18-alanine acetyltransferase, at 58,654 to 59,106 _00056 CCNA_00057: CCNA_00057 - glycoprotease family protein, at 59,115 to 59,750 _00057 CCNA_00058: CCNA_00058 - hypothetical protein, at 59,754 to 60,386 _00058 Position (kb) 58 59 60Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 57.665 kb on + strand, within CCNA_00054at 57.733 kb on - strand, within CCNA_00054at 57.738 kb on - strand, within CCNA_00054at 57.768 kb on - strand, within CCNA_00054at 57.816 kb on + strand, within CCNA_00054at 57.829 kb on - strand, within CCNA_00054at 57.829 kb on - strand, within CCNA_00054at 57.852 kb on + strand, within CCNA_00054at 57.868 kb on - strand, within CCNA_00054at 57.868 kb on - strand, within CCNA_00054at 57.870 kb on - strand, within CCNA_00054at 57.892 kb on - strandat 57.910 kb on + strandat 57.913 kb on - strandat 57.932 kb on + strandat 57.940 kb on - strandat 57.946 kb on + strandat 57.954 kb on - strandat 58.001 kb on + strandat 58.027 kb on - strandat 58.035 kb on + strandat 58.043 kb on + strandat 58.043 kb on + strandat 58.043 kb on - strandat 58.051 kb on - strandat 58.058 kb on - strandat 58.092 kb on + strandat 58.111 kb on + strandat 58.111 kb on + strandat 58.116 kb on + strandat 58.116 kb on + strandat 58.124 kb on - strandat 58.124 kb on - strandat 58.178 kb on - strandat 58.179 kb on - strandat 58.192 kb on + strandat 58.192 kb on - strandat 58.192 kb on - strandat 58.623 kb on - strandat 58.651 kb on - strandat 58.675 kb on + strandat 58.709 kb on + strand, within CCNA_00056at 58.733 kb on + strand, within CCNA_00056at 58.742 kb on - strand, within CCNA_00056at 58.751 kb on + strand, within CCNA_00056at 58.751 kb on + strand, within CCNA_00056at 58.759 kb on - strand, within CCNA_00056at 58.759 kb on - strandat 58.759 kb on - strand, within CCNA_00056at 58.764 kb on - strand, within CCNA_00056at 58.811 kb on + strand, within CCNA_00056at 58.819 kb on - strand, within CCNA_00056at 58.819 kb on - strand, within CCNA_00056at 58.819 kb on - strand, within CCNA_00056at 58.841 kb on + strand, within CCNA_00056at 58.849 kb on - strand, within CCNA_00056at 58.854 kb on - strand, within CCNA_00056at 58.854 kb on - strand, within CCNA_00056at 58.854 kb on - strand, within CCNA_00056at 58.943 kb on - strand, within CCNA_00056at 58.943 kb on - strand, within CCNA_00056at 58.943 kb on - strand, within CCNA_00056at 58.943 kb on - strand, within CCNA_00056at 58.951 kb on - strand, within CCNA_00056at 59.025 kb on - strand, within CCNA_00056at 59.027 kb on + strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.095 kb on + strandat 59.133 kb on + strandat 59.207 kb on - strand, within CCNA_00057at 59.745 kb on + strandat 59.775 kb on + strandat 59.800 kb on + strandat 59.800 kb on + strandat 59.820 kb on - strand, within CCNA_00058at 59.848 kb on + strand, within CCNA_00058at 59.856 kb on - strand, within CCNA_00058at 59.901 kb on - strand, within CCNA_00058at 59.931 kb on + strand, within CCNA_00058at 59.939 kb on - strand, within CCNA_00058at 59.941 kb on + strand, within CCNA_00058at 59.949 kb on - strand, within CCNA_00058at 59.949 kb on - strand, within CCNA_00058at 59.952 kb on - strand, within CCNA_00058at 59.972 kb on + strand, within CCNA_00058at 59.983 kb on + strand, within CCNA_00058at 60.033 kb on + strand, within CCNA_00058at 60.035 kb on + strand, within CCNA_00058at 60.041 kb on - strand, within CCNA_00058at 60.082 kb on + strand, within CCNA_00058at 60.090 kb on - strand, within CCNA_00058at 60.090 kb on - strand, within CCNA_00058at 60.090 kb on - strand, within CCNA_00058at 60.095 kb on - strand, within CCNA_00058

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 4C survival rep1 58 days
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57,665 + CCNA_00054 0.74 -2.5
57,733 - CCNA_00054 0.79 -0.1
57,738 - CCNA_00054 0.80 -0.3
57,768 - CCNA_00054 0.82 -1.4
57,816 + CCNA_00054 0.85 -0.2
57,829 - CCNA_00054 0.86 +0.1
57,829 - CCNA_00054 0.86 +0.4
57,852 + CCNA_00054 0.88 +1.6
57,868 - CCNA_00054 0.89 -0.8
57,868 - CCNA_00054 0.89 -0.4
57,870 - CCNA_00054 0.89 -0.5
57,892 - -1.3
57,910 + +0.6
57,913 - -0.4
57,932 + -0.8
57,940 - +0.4
57,946 + -0.0
57,954 - -0.5
58,001 + -0.4
58,027 - -2.0
58,035 + +1.0
58,043 + -1.4
58,043 + +0.1
58,043 - -0.4
58,051 - -1.4
58,058 - -0.1
58,092 + -1.1
58,111 + -0.3
58,111 + -1.5
58,116 + -0.1
58,116 + -1.1
58,124 - -0.4
58,124 - +0.6
58,178 - +1.9
58,179 - -0.6
58,192 + -2.0
58,192 - +1.1
58,192 - +0.8
58,623 - +0.4
58,651 - -0.2
58,675 + -0.8
58,709 + CCNA_00056 0.12 -1.9
58,733 + CCNA_00056 0.17 -1.2
58,742 - CCNA_00056 0.19 -2.1
58,751 + CCNA_00056 0.21 -2.1
58,751 + CCNA_00056 0.21 -2.0
58,759 - CCNA_00056 0.23 -0.0
58,759 - -2.1
58,759 - CCNA_00056 0.23 +0.6
58,764 - CCNA_00056 0.24 -1.4
58,811 + CCNA_00056 0.35 -3.8
58,819 - CCNA_00056 0.36 -2.2
58,819 - CCNA_00056 0.36 -3.7
58,819 - CCNA_00056 0.36 -2.8
58,841 + CCNA_00056 0.41 -1.8
58,849 - CCNA_00056 0.43 -2.2
58,854 - CCNA_00056 0.44 -2.3
58,854 - CCNA_00056 0.44 -1.6
58,854 - CCNA_00056 0.44 -1.0
58,943 - CCNA_00056 0.64 -1.6
58,943 - CCNA_00056 0.64 -1.9
58,943 - CCNA_00056 0.64 -2.7
58,943 - CCNA_00056 0.64 -0.3
58,951 - CCNA_00056 0.66 -4.2
59,025 - CCNA_00056 0.82 -2.4
59,027 + CCNA_00056 0.82 +1.6
59,035 - CCNA_00056 0.84 -2.2
59,035 - CCNA_00056 0.84 -2.7
59,035 - CCNA_00056 0.84 -2.2
59,035 - CCNA_00056 0.84 -1.4
59,035 - CCNA_00056 0.84 -2.3
59,035 - CCNA_00056 0.84 -1.2
59,035 - CCNA_00056 0.84 -3.2
59,095 + -1.6
59,133 + -0.1
59,207 - CCNA_00057 0.14 -2.1
59,745 + -0.2
59,775 + -1.3
59,800 + -2.7
59,800 + -2.9
59,820 - CCNA_00058 0.10 +0.6
59,848 + CCNA_00058 0.15 -3.5
59,856 - CCNA_00058 0.16 +0.4
59,901 - CCNA_00058 0.23 -1.6
59,931 + CCNA_00058 0.28 -0.1
59,939 - CCNA_00058 0.29 +3.0
59,941 + CCNA_00058 0.30 +0.6
59,949 - CCNA_00058 0.31 -0.6
59,949 - CCNA_00058 0.31 +0.2
59,952 - CCNA_00058 0.31 -0.9
59,972 + CCNA_00058 0.34 -1.1
59,983 + CCNA_00058 0.36 -1.4
60,033 + CCNA_00058 0.44 -0.4
60,035 + CCNA_00058 0.44 +0.1
60,041 - CCNA_00058 0.45 +0.6
60,082 + CCNA_00058 0.52 -0.0
60,090 - CCNA_00058 0.53 -0.4
60,090 - CCNA_00058 0.53 -0.6
60,090 - CCNA_00058 0.53 +0.2
60,095 - CCNA_00058 0.54 +0.3

Or see this region's nucleotide sequence