Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2649

Experiment: MoLS4 with L-Serine (N) without Tungstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2646 and DVU2647 are separated by 49 nucleotidesDVU2647 and DVU2648 are separated by 69 nucleotidesDVU2648 and DVU2649 overlap by 4 nucleotidesDVU2649 and DVU2650 are separated by 544 nucleotides DVU2646: DVU2646 - 1-aminocyclopropane-1-carboxylate deaminase (TIGR), at 2,763,062 to 2,764,060 DVU2646 DVU2647: DVU2647 - endoribonuclease, L-PSP family (TIGR), at 2,764,110 to 2,764,499 DVU2647 DVU2648: DVU2648 - hypothetical protein (TIGR), at 2,764,569 to 2,764,895 DVU2648 DVU2649: DVU2649 - hypothetical protein (TIGR), at 2,764,892 to 2,765,152 DVU2649 DVU2650: DVU2650 - hypothetical protein (TIGR), at 2,765,697 to 2,766,302 DVU2650 Position (kb) 2764 2765 2766Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2763.896 kb on - strand, within DVU2646at 2763.940 kb on + strand, within DVU2646at 2764.083 kb on + strandat 2764.096 kb on + strandat 2764.104 kb on - strandat 2764.115 kb on - strandat 2764.115 kb on - strandat 2764.158 kb on + strand, within DVU2647at 2764.166 kb on - strand, within DVU2647at 2764.166 kb on - strand, within DVU2647at 2764.204 kb on + strand, within DVU2647at 2764.209 kb on + strand, within DVU2647at 2764.212 kb on - strand, within DVU2647at 2764.234 kb on + strand, within DVU2647at 2764.287 kb on - strand, within DVU2647at 2764.326 kb on + strand, within DVU2647at 2764.357 kb on - strand, within DVU2647at 2764.495 kb on + strandat 2764.661 kb on - strand, within DVU2648at 2764.684 kb on - strand, within DVU2648at 2764.742 kb on - strand, within DVU2648at 2764.767 kb on - strand, within DVU2648at 2764.848 kb on + strand, within DVU2648at 2764.856 kb on - strand, within DVU2648at 2764.875 kb on - strandat 2764.899 kb on - strandat 2764.922 kb on - strand, within DVU2649at 2764.944 kb on - strand, within DVU2649at 2764.944 kb on - strand, within DVU2649at 2764.955 kb on + strand, within DVU2649at 2765.045 kb on + strand, within DVU2649at 2765.053 kb on - strand, within DVU2649at 2765.350 kb on + strandat 2765.360 kb on + strandat 2765.390 kb on - strandat 2765.524 kb on + strandat 2765.532 kb on - strandat 2765.582 kb on - strandat 2765.654 kb on - strandat 2765.654 kb on - strandat 2765.771 kb on + strand, within DVU2650at 2765.926 kb on + strand, within DVU2650at 2765.964 kb on - strand, within DVU2650at 2765.977 kb on + strand, within DVU2650at 2766.015 kb on + strand, within DVU2650at 2766.068 kb on - strand, within DVU2650at 2766.068 kb on - strand, within DVU2650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Tungstate
remove
2,763,896 - DVU2646 0.83 -0.4
2,763,940 + DVU2646 0.88 -0.2
2,764,083 + -2.1
2,764,096 + -1.1
2,764,104 - -0.2
2,764,115 - -0.5
2,764,115 - +1.0
2,764,158 + DVU2647 0.12 -0.4
2,764,166 - DVU2647 0.14 -0.7
2,764,166 - DVU2647 0.14 -0.6
2,764,204 + DVU2647 0.24 -0.7
2,764,209 + DVU2647 0.25 -0.5
2,764,212 - DVU2647 0.26 +1.0
2,764,234 + DVU2647 0.32 -0.4
2,764,287 - DVU2647 0.45 -0.6
2,764,326 + DVU2647 0.55 -0.4
2,764,357 - DVU2647 0.63 -0.2
2,764,495 + -0.2
2,764,661 - DVU2648 0.28 +0.1
2,764,684 - DVU2648 0.35 -1.4
2,764,742 - DVU2648 0.53 -0.3
2,764,767 - DVU2648 0.61 -0.4
2,764,848 + DVU2648 0.85 -1.7
2,764,856 - DVU2648 0.88 -0.8
2,764,875 - -1.8
2,764,899 - +0.2
2,764,922 - DVU2649 0.11 -0.5
2,764,944 - DVU2649 0.20 -0.4
2,764,944 - DVU2649 0.20 +1.0
2,764,955 + DVU2649 0.24 -1.2
2,765,045 + DVU2649 0.59 -0.2
2,765,053 - DVU2649 0.62 +2.4
2,765,350 + +0.8
2,765,360 + +0.0
2,765,390 - -0.4
2,765,524 + -0.6
2,765,532 - -0.1
2,765,582 - +0.3
2,765,654 - -0.0
2,765,654 - -0.2
2,765,771 + DVU2650 0.12 +2.8
2,765,926 + DVU2650 0.38 -0.8
2,765,964 - DVU2650 0.44 -0.9
2,765,977 + DVU2650 0.46 +0.2
2,766,015 + DVU2650 0.52 +0.3
2,766,068 - DVU2650 0.61 +0.4
2,766,068 - DVU2650 0.61 -0.9

Or see this region's nucleotide sequence