Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01355 and RS_RS25290 are separated by 53 nucleotides RS_RS25290 and RS_RS01360 are separated by 340 nucleotides
RS_RS01355: RS_RS01355 - acetyl-CoA C-acyltransferase, at 307,801 to 308,982
_RS01355
RS_RS25290: RS_RS25290 - hypothetical protein, at 309,036 to 309,274
_RS25290
RS_RS01360: RS_RS01360 - carbonate dehydratase, at 309,615 to 310,295
_RS01360
Position (kb) 309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 308.474 kb on + strand, within RS_RS01355 at 308.474 kb on + strand, within RS_RS01355 at 308.474 kb on + strand, within RS_RS01355 at 308.561 kb on + strand, within RS_RS01355 at 308.612 kb on + strand, within RS_RS01355 at 308.612 kb on + strand, within RS_RS01355 at 308.989 kb on + strand at 308.989 kb on + strand at 308.990 kb on - strand at 308.990 kb on - strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.579 kb on + strand at 309.579 kb on + strand at 309.579 kb on + strand at 309.579 kb on + strand at 309.656 kb on - strand at 309.749 kb on - strand, within RS_RS01360 at 309.895 kb on + strand, within RS_RS01360 at 309.896 kb on - strand, within RS_RS01360 at 309.896 kb on - strand, within RS_RS01360 at 310.183 kb on + strand, within RS_RS01360 at 310.183 kb on + strand, within RS_RS01360 at 310.184 kb on - strand, within RS_RS01360
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 308,474 + RS_RS01355 0.57 +1.0 308,474 + RS_RS01355 0.57 +1.0 308,474 + RS_RS01355 0.57 -1.5 308,561 + RS_RS01355 0.64 +1.0 308,612 + RS_RS01355 0.69 -0.7 308,612 + RS_RS01355 0.69 -0.7 308,989 + +0.1 308,989 + -1.6 308,990 - -2.0 308,990 - -0.7 309,033 + -1.3 309,033 + -0.1 309,033 + -2.5 309,033 + -1.4 309,579 + -2.0 309,579 + -1.7 309,579 + -1.2 309,579 + -0.7 309,656 - -0.1 309,749 - RS_RS01360 0.20 +1.1 309,895 + RS_RS01360 0.41 +1.9 309,896 - RS_RS01360 0.41 +1.2 309,896 - RS_RS01360 0.41 +1.9 310,183 + RS_RS01360 0.83 -0.9 310,183 + RS_RS01360 0.83 -1.1 310,184 - RS_RS01360 0.84 +1.3
Or see this region's nucleotide sequence