Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS24180

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS24170 and RS_RS24175 overlap by 8 nucleotidesRS_RS24175 and RS_RS24180 are separated by 1 nucleotidesRS_RS24180 and RS_RS24185 are separated by 410 nucleotidesRS_RS24185 and RS_RS24190 are separated by 192 nucleotides RS_RS24170: RS_RS24170 - ABC transporter ATP-binding protein, at 1,841,492 to 1,842,835 _RS24170 RS_RS24175: RS_RS24175 - ABC transporter ATP-binding protein, at 1,842,828 to 1,843,610 _RS24175 RS_RS24180: RS_RS24180 - ABC transporter permease, at 1,843,612 to 1,844,874 _RS24180 RS_RS24185: RS_RS24185 - hypothetical protein, at 1,845,285 to 1,845,629 _RS24185 RS_RS24190: RS_RS24190 - hypothetical protein, at 1,845,822 to 1,846,151 _RS24190 Position (kb) 1843 1844 1845Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1843.076 kb on + strand, within RS_RS24175at 1843.200 kb on + strand, within RS_RS24175at 1843.201 kb on - strand, within RS_RS24175at 1843.637 kb on + strandat 1843.637 kb on + strandat 1843.638 kb on - strandat 1844.236 kb on + strand, within RS_RS24180at 1844.236 kb on + strand, within RS_RS24180at 1844.236 kb on + strand, within RS_RS24180at 1844.237 kb on - strand, within RS_RS24180at 1844.237 kb on - strand, within RS_RS24180at 1844.293 kb on + strand, within RS_RS24180at 1844.294 kb on - strand, within RS_RS24180at 1844.488 kb on + strand, within RS_RS24180at 1844.488 kb on + strand, within RS_RS24180at 1844.489 kb on - strand, within RS_RS24180at 1844.755 kb on - strandat 1844.985 kb on - strandat 1844.993 kb on - strandat 1845.035 kb on - strandat 1845.158 kb on + strandat 1845.438 kb on + strand, within RS_RS24185at 1845.438 kb on + strand, within RS_RS24185at 1845.438 kb on + strand, within RS_RS24185at 1845.439 kb on - strand, within RS_RS24185at 1845.439 kb on - strand, within RS_RS24185at 1845.439 kb on - strand, within RS_RS24185at 1845.480 kb on + strand, within RS_RS24185at 1845.480 kb on + strand, within RS_RS24185at 1845.481 kb on - strand, within RS_RS24185at 1845.503 kb on + strand, within RS_RS24185at 1845.504 kb on - strand, within RS_RS24185at 1845.504 kb on - strand, within RS_RS24185at 1845.504 kb on - strand, within RS_RS24185at 1845.604 kb on - strandat 1845.643 kb on + strandat 1845.660 kb on - strandat 1845.660 kb on - strandat 1845.794 kb on + strandat 1845.794 kb on + strandat 1845.827 kb on + strandat 1845.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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1,843,076 + RS_RS24175 0.32 +0.1
1,843,200 + RS_RS24175 0.48 +0.4
1,843,201 - RS_RS24175 0.48 -0.8
1,843,637 + -1.0
1,843,637 + -0.4
1,843,638 - -0.1
1,844,236 + RS_RS24180 0.49 -0.5
1,844,236 + RS_RS24180 0.49 -0.2
1,844,236 + RS_RS24180 0.49 -0.8
1,844,237 - RS_RS24180 0.49 -0.1
1,844,237 - RS_RS24180 0.49 +1.3
1,844,293 + RS_RS24180 0.54 +0.9
1,844,294 - RS_RS24180 0.54 -1.1
1,844,488 + RS_RS24180 0.69 +0.2
1,844,488 + RS_RS24180 0.69 +1.1
1,844,489 - RS_RS24180 0.69 -0.2
1,844,755 - -0.2
1,844,985 - +2.6
1,844,993 - -0.2
1,845,035 - +0.3
1,845,158 + +0.4
1,845,438 + RS_RS24185 0.44 +0.7
1,845,438 + RS_RS24185 0.44 +0.3
1,845,438 + RS_RS24185 0.44 +0.2
1,845,439 - RS_RS24185 0.45 +0.6
1,845,439 - RS_RS24185 0.45 -2.0
1,845,439 - RS_RS24185 0.45 -1.1
1,845,480 + RS_RS24185 0.57 -2.3
1,845,480 + RS_RS24185 0.57 +0.4
1,845,481 - RS_RS24185 0.57 +0.8
1,845,503 + RS_RS24185 0.63 +0.8
1,845,504 - RS_RS24185 0.63 +0.4
1,845,504 - RS_RS24185 0.63 -0.2
1,845,504 - RS_RS24185 0.63 -2.0
1,845,604 - +0.0
1,845,643 + +0.4
1,845,660 - -0.8
1,845,660 - -0.9
1,845,794 + +1.6
1,845,794 + -2.3
1,845,827 + +0.6
1,845,828 - -3.1

Or see this region's nucleotide sequence