Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23030

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23025 and RS_RS23030 overlap by 4 nucleotidesRS_RS23030 and RS_RS23035 are separated by 14 nucleotides RS_RS23025: RS_RS23025 - NAD(P)/FAD-dependent oxidoreductase, at 1,552,335 to 1,553,564 _RS23025 RS_RS23030: RS_RS23030 - nitrite reductase (NAD(P)H) small subunit, at 1,553,561 to 1,553,902 _RS23030 RS_RS23035: RS_RS23035 - nitrite reductase large subunit, at 1,553,917 to 1,556,469 _RS23035 Position (kb) 1553 1554Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1552.625 kb on - strand, within RS_RS23025at 1552.753 kb on + strand, within RS_RS23025at 1552.754 kb on - strand, within RS_RS23025at 1552.754 kb on - strand, within RS_RS23025at 1553.252 kb on - strand, within RS_RS23025at 1553.350 kb on + strand, within RS_RS23025at 1553.351 kb on - strand, within RS_RS23025at 1553.468 kb on - strandat 1553.758 kb on - strand, within RS_RS23030at 1553.758 kb on - strand, within RS_RS23030at 1553.758 kb on - strand, within RS_RS23030at 1553.773 kb on - strand, within RS_RS23030at 1554.107 kb on + strandat 1554.108 kb on - strandat 1554.175 kb on + strand, within RS_RS23035at 1554.175 kb on + strand, within RS_RS23035at 1554.175 kb on + strand, within RS_RS23035at 1554.257 kb on + strand, within RS_RS23035at 1554.257 kb on + strand, within RS_RS23035at 1554.258 kb on - strand, within RS_RS23035at 1554.258 kb on - strand, within RS_RS23035at 1554.363 kb on - strand, within RS_RS23035at 1554.363 kb on - strand, within RS_RS23035at 1554.363 kb on - strand, within RS_RS23035at 1554.363 kb on - strand, within RS_RS23035at 1554.482 kb on + strand, within RS_RS23035at 1554.482 kb on + strand, within RS_RS23035at 1554.483 kb on - strand, within RS_RS23035at 1554.584 kb on + strand, within RS_RS23035at 1554.695 kb on + strand, within RS_RS23035at 1554.695 kb on + strand, within RS_RS23035at 1554.696 kb on - strand, within RS_RS23035at 1554.696 kb on - strand, within RS_RS23035at 1554.704 kb on + strand, within RS_RS23035at 1554.704 kb on + strand, within RS_RS23035at 1554.704 kb on + strand, within RS_RS23035at 1554.705 kb on - strand, within RS_RS23035at 1554.816 kb on - strand, within RS_RS23035

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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1,552,625 - RS_RS23025 0.24 +1.0
1,552,753 + RS_RS23025 0.34 -3.2
1,552,754 - RS_RS23025 0.34 +1.5
1,552,754 - RS_RS23025 0.34 -0.3
1,553,252 - RS_RS23025 0.75 +0.4
1,553,350 + RS_RS23025 0.83 +0.6
1,553,351 - RS_RS23025 0.83 -1.2
1,553,468 - +0.1
1,553,758 - RS_RS23030 0.58 +0.2
1,553,758 - RS_RS23030 0.58 +0.1
1,553,758 - RS_RS23030 0.58 -3.0
1,553,773 - RS_RS23030 0.62 -0.6
1,554,107 + +0.5
1,554,108 - +0.4
1,554,175 + RS_RS23035 0.10 -0.3
1,554,175 + RS_RS23035 0.10 -0.7
1,554,175 + RS_RS23035 0.10 +2.1
1,554,257 + RS_RS23035 0.13 -0.6
1,554,257 + RS_RS23035 0.13 +0.7
1,554,258 - RS_RS23035 0.13 -0.7
1,554,258 - RS_RS23035 0.13 +1.1
1,554,363 - RS_RS23035 0.17 -1.3
1,554,363 - RS_RS23035 0.17 -1.4
1,554,363 - RS_RS23035 0.17 -0.3
1,554,363 - RS_RS23035 0.17 -1.1
1,554,482 + RS_RS23035 0.22 -0.0
1,554,482 + RS_RS23035 0.22 -0.5
1,554,483 - RS_RS23035 0.22 +1.0
1,554,584 + RS_RS23035 0.26 -5.4
1,554,695 + RS_RS23035 0.30 -0.3
1,554,695 + RS_RS23035 0.30 +0.1
1,554,696 - RS_RS23035 0.31 +0.0
1,554,696 - RS_RS23035 0.31 +1.0
1,554,704 + RS_RS23035 0.31 +1.0
1,554,704 + RS_RS23035 0.31 +1.1
1,554,704 + RS_RS23035 0.31 -0.3
1,554,705 - RS_RS23035 0.31 +0.2
1,554,816 - RS_RS23035 0.35 +0.1

Or see this region's nucleotide sequence