Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20095 and RS_RS20100 are separated by 2 nucleotides RS_RS20100 and RS_RS20105 overlap by 4 nucleotides
RS_RS20095: RS_RS20095 - cobalt-precorrin-5B (C(1))-methyltransferase, at 753,312 to 754,463
_RS20095
RS_RS20100: RS_RS20100 - membrane protein, at 754,466 to 756,070
_RS20100
RS_RS20105: RS_RS20105 - cobalt-precorrin-7 (C(5))-methyltransferase, at 756,067 to 756,774
_RS20105
Position (kb) 754
755
756
757 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 753.497 kb on + strand, within RS_RS20095 at 753.497 kb on + strand, within RS_RS20095 at 753.498 kb on - strand, within RS_RS20095 at 753.700 kb on + strand, within RS_RS20095 at 753.844 kb on + strand, within RS_RS20095 at 753.844 kb on + strand, within RS_RS20095 at 753.844 kb on + strand, within RS_RS20095 at 753.844 kb on + strand, within RS_RS20095 at 753.845 kb on - strand, within RS_RS20095 at 753.845 kb on - strand, within RS_RS20095 at 753.845 kb on - strand, within RS_RS20095 at 753.845 kb on - strand, within RS_RS20095 at 754.220 kb on - strand, within RS_RS20095 at 754.292 kb on - strand, within RS_RS20095 at 754.292 kb on - strand, within RS_RS20095 at 754.500 kb on + strand at 754.501 kb on - strand at 754.501 kb on - strand at 754.980 kb on + strand, within RS_RS20100 at 754.981 kb on - strand, within RS_RS20100 at 754.981 kb on - strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.121 kb on + strand, within RS_RS20100 at 755.122 kb on - strand, within RS_RS20100 at 755.247 kb on + strand, within RS_RS20100 at 755.248 kb on - strand, within RS_RS20100 at 755.403 kb on + strand, within RS_RS20100 at 755.403 kb on + strand, within RS_RS20100 at 755.403 kb on + strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.404 kb on - strand, within RS_RS20100 at 755.439 kb on + strand, within RS_RS20100 at 755.523 kb on + strand, within RS_RS20100 at 756.028 kb on - strand at 756.028 kb on - strand at 756.257 kb on + strand, within RS_RS20105 at 756.509 kb on + strand, within RS_RS20105 at 756.510 kb on - strand, within RS_RS20105 at 757.063 kb on + strand at 757.063 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 753,497 + RS_RS20095 0.16 +0.1 753,497 + RS_RS20095 0.16 +0.0 753,498 - RS_RS20095 0.16 -1.2 753,700 + RS_RS20095 0.34 +0.3 753,844 + RS_RS20095 0.46 -0.8 753,844 + RS_RS20095 0.46 -1.4 753,844 + RS_RS20095 0.46 +0.1 753,844 + RS_RS20095 0.46 -0.2 753,845 - RS_RS20095 0.46 -0.3 753,845 - RS_RS20095 0.46 -0.8 753,845 - RS_RS20095 0.46 -0.3 753,845 - RS_RS20095 0.46 +1.0 754,220 - RS_RS20095 0.79 -0.4 754,292 - RS_RS20095 0.85 +1.1 754,292 - RS_RS20095 0.85 -0.3 754,500 + +1.2 754,501 - +0.0 754,501 - +1.2 754,980 + RS_RS20100 0.32 +0.2 754,981 - RS_RS20100 0.32 +1.6 754,981 - RS_RS20100 0.32 -1.1 755,121 + RS_RS20100 0.41 -3.1 755,121 + RS_RS20100 0.41 +0.2 755,121 + RS_RS20100 0.41 -0.2 755,121 + RS_RS20100 0.41 -0.7 755,122 - RS_RS20100 0.41 +0.4 755,247 + RS_RS20100 0.49 +0.3 755,248 - RS_RS20100 0.49 -1.1 755,403 + RS_RS20100 0.58 +0.6 755,403 + RS_RS20100 0.58 -4.8 755,403 + RS_RS20100 0.58 -2.0 755,404 - RS_RS20100 0.58 +1.0 755,404 - RS_RS20100 0.58 -0.6 755,404 - RS_RS20100 0.58 -2.6 755,404 - RS_RS20100 0.58 -0.7 755,404 - RS_RS20100 0.58 +0.8 755,404 - RS_RS20100 0.58 -1.0 755,439 + RS_RS20100 0.61 +1.1 755,523 + RS_RS20100 0.66 -0.6 756,028 - +1.0 756,028 - -1.0 756,257 + RS_RS20105 0.27 -0.3 756,509 + RS_RS20105 0.62 -0.3 756,510 - RS_RS20105 0.63 -1.5 757,063 + +1.5 757,063 + +0.3
Or see this region's nucleotide sequence